Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FPL17_RS12890 Genome accession   NZ_CP041970
Coordinates   2807791..2809227 (+) Length   478 a.a.
NCBI ID   WP_005210046.1    Uniprot ID   -
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2802791..2814227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS12865 (FPL17_13010) - 2802903..2803673 (-) 771 WP_159885407.1 hypothetical protein -
  FPL17_RS12870 (FPL17_13015) - 2803833..2804127 (-) 295 Protein_2542 DUF6915 family protein -
  FPL17_RS12875 (FPL17_13020) pbpG 2804277..2805341 (-) 1065 WP_143233178.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  FPL17_RS12880 (FPL17_13025) - 2805551..2806186 (+) 636 WP_005154729.1 response regulator transcription factor GacA -
  FPL17_RS12885 (FPL17_13030) pilS 2806204..2807769 (+) 1566 WP_159885409.1 sensor histidine kinase Regulator
  FPL17_RS12890 (FPL17_13035) pilR 2807791..2809227 (+) 1437 WP_005210046.1 sigma-54-dependent transcriptional regulator Regulator
  FPL17_RS12895 (FPL17_13040) - 2809265..2810443 (-) 1179 WP_005191756.1 S41 family peptidase -
  FPL17_RS12900 (FPL17_13045) gpmI 2810453..2811997 (-) 1545 WP_159885411.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  FPL17_RS12905 (FPL17_13050) lptG 2812119..2813189 (-) 1071 WP_005191753.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 53587.45 Da        Isoelectric Point: 6.2462

>NTDB_id=375085 FPL17_RS12890 WP_005210046.1 2807791..2809227(+) (pilR) [Acinetobacter dispersus strain NCCP 16014]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQMHLDQLIQKALNRPQPEQEAAETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LANHFIQRISQEWELSTKSLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDDNIDLAHLQTAPLRSSLANPAPSFSNT
AAEEAETPQHSASPNMSSKKLPPEGLERYLENIEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=375085 FPL17_RS12890 WP_005210046.1 2807791..2809227(+) (pilR) [Acinetobacter dispersus strain NCCP 16014]
ATGGCAACAAAACAACCACTCGTCTTACTGGTAGACGACGAAGAAGATTTATGTCTTTTAATGCAGATGACGCTAGCACG
CATGGGCATCAAGACACATCTCGCTTATCGGGTCGAACAGGCAAAAAAATTCTTTACTGAGTTCCAGTACGATGCCTGTT
TAACAGATTTAAATCTTCCAGATGGTAATGGTTTGGATCTGGTCAAACATGTAACACAGAACTATCCCAATACACCTATT
GCGGTGTTAACTGCGTACGGCAATATGGATATTGCCATTGCAGCACTTAAAGCAGGCGCATTTGATTTTGTCAGCAAACC
TGTCAATCAAATGCATTTGGATCAACTGATCCAAAAAGCCTTGAATCGTCCACAGCCAGAACAAGAGGCAGCTGAAACAG
CTTTAGAAAATAAACTGTTAATCGGACGTTCAGCACCTATTCAACAATTACGTATCGCTTTAAAGAAAATCGCTCGTTCT
CAAGCCCCTGTTTTTATTACAGGTGAATCAGGAACAGGAAAGGAAGTCGTCGCGAATCTAGTGCATCGTTTGAGTAACCG
TAGCGAAGGTCCTTTTATTGCCATTAACTGTGGCGCGATTCCAACTGAATTGATGGAAAGCGAACTATTTGGGCATAAAA
AAGGCAGCTTTACCGGTGCAACACAGGACAAACAAGGCTTAATTCTCTCTGCTCACGGCGGTAGTCTATTTTTAGATGAA
ATTGCTGAACTGCCTTTAAATATGCAGGTCAAACTACTCCGTGCAGTACAAGAAAAGAAAATTCGTCCTGTCGGTTCAGA
TCAAGAGATTGATGTTGATTTCCGTGTCATCAGTGCCAGTCATCAAGATTTGGAACTGTTGGTACAGCAAGGTCGTTTCC
GACAAGACCTATTCTTCCGTATTCATGTGATGGACATCGTTCTACCACCATTACGTGAACGTGGACAAGACATCCTCTTA
TTGGCAAATCACTTTATTCAAAGAATTAGCCAAGAATGGGAGTTATCGACAAAGTCACTCTCCTCGCGTGCAGAGCAATT
CCTATTGCAGCAGTATTTCCCGGGAAATGTGCGTGAATTACGCAACATCATTGAACGTGCGATTACACTGAGTGATGATG
ACAATATCGACTTGGCCCATTTACAAACAGCACCATTACGCAGTTCATTGGCCAATCCAGCACCGTCATTTTCCAACACA
GCAGCAGAAGAAGCTGAAACACCACAACATTCTGCAAGCCCAAACATGAGTTCAAAGAAGCTTCCACCTGAAGGCTTGGA
ACGTTATTTAGAGAATATCGAAAAAGAAATTCTTCTGAATGCACTTAATCTCACCCATTGGAATCGAACATTAGCCGCGA
AAAAATTAGGAATGACCTTCCGTTCGTTACGCTACCGTTTGAAAAAATTCGGTTTAGATACTGAAGATGATGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(430-470)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

82.845

100

0.828
  pilR Pseudomonas aeruginosa PAK

50

97.49

0.487

Multiple sequence alignment