Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   FPL17_RS12885 Genome accession   NZ_CP041970
Coordinates   2806204..2807769 (+) Length   521 a.a.
NCBI ID   WP_159885409.1    Uniprot ID   -
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2801204..2812769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS12860 (FPL17_13005) thrC 2801693..2802832 (+) 1140 WP_159885405.1 threonine synthase -
  FPL17_RS12865 (FPL17_13010) - 2802903..2803673 (-) 771 WP_159885407.1 hypothetical protein -
  FPL17_RS12870 (FPL17_13015) - 2803833..2804127 (-) 295 Protein_2542 DUF6915 family protein -
  FPL17_RS12875 (FPL17_13020) pbpG 2804277..2805341 (-) 1065 WP_143233178.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  FPL17_RS12880 (FPL17_13025) - 2805551..2806186 (+) 636 WP_005154729.1 response regulator transcription factor GacA -
  FPL17_RS12885 (FPL17_13030) pilS 2806204..2807769 (+) 1566 WP_159885409.1 sensor histidine kinase Regulator
  FPL17_RS12890 (FPL17_13035) pilR 2807791..2809227 (+) 1437 WP_005210046.1 sigma-54-dependent transcriptional regulator Regulator
  FPL17_RS12895 (FPL17_13040) - 2809265..2810443 (-) 1179 WP_005191756.1 S41 family peptidase -
  FPL17_RS12900 (FPL17_13045) gpmI 2810453..2811997 (-) 1545 WP_159885411.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59284.13 Da        Isoelectric Point: 6.2700

>NTDB_id=375084 FPL17_RS12885 WP_159885409.1 2806204..2807769(+) (pilS) [Acinetobacter dispersus strain NCCP 16014]
MLGKIASTVSQTVYRLGIWYSGYRLIISISLLLIYLLTAEQLSSNYIYPFLYFYTLICYITINIFQLFLLQLLPIQTSKQ
LIFIFLIDVICLSLITFSAGGPNLQLSLLYVIIIFSSAILLNAQLSLIITLFAVIMVVYQRFLGDFFDVNNLNHLGNSIF
LAFLFFVVHAIGRIAVQRFKILETLTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLTNPAANTLLGIHLPISLE
KTPLIKLQPDLFELIQFSDLKDGEEFSFESQQSAYTINVRVKHLLVPEQALVLLILKDAQKLTQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELFKDSDPHQQEMLSRMISKQAKRIDSIVQDTLAMARNKPTEVQEIDLSSFFESLLNEDLADAK
QQIQIKLTEQVGILFDEKQLRQVLINLIRNALRHNATDAPYIEVEVHEKDGRTCIDVIDFGTGVSKRDISQLFKPFFSTE
IKGTGLGLYLSHTFCEANHAKLTYIERQQGACFRIECSKIH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=375084 FPL17_RS12885 WP_159885409.1 2806204..2807769(+) (pilS) [Acinetobacter dispersus strain NCCP 16014]
ATGTTAGGGAAAATTGCGTCAACAGTTTCACAGACGGTCTATCGGCTCGGCATTTGGTATAGTGGCTATCGGCTCATTAT
TTCGATCAGCCTACTTTTAATTTATTTATTGACTGCTGAGCAGCTGTCTAGCAACTATATTTACCCTTTTTTATATTTCT
ATACGCTGATTTGTTATATCACAATCAATATTTTTCAGCTTTTTTTACTGCAACTGCTTCCGATACAGACGTCCAAGCAA
CTGATTTTTATCTTTCTGATAGATGTCATTTGTTTAAGCTTAATCACCTTCTCTGCGGGTGGTCCAAATCTGCAACTAAG
CTTGCTTTACGTCATTATTATTTTTTCTTCTGCGATATTATTAAATGCTCAGCTTTCGCTGATCATTACTTTATTTGCCG
TGATTATGGTGGTTTACCAGCGTTTTTTAGGTGACTTCTTTGACGTTAATAATTTAAATCATCTTGGTAATAGCATTTTT
CTGGCGTTTTTGTTCTTTGTAGTCCATGCCATTGGTCGTATTGCAGTACAACGTTTTAAAATTTTAGAAACTTTAACTTT
TCATCAATCCATTGAAATTCACCAGCTGCAAAATATTAACCGCTATATCTTAGAACAGATTGAAGATGGTTATTTGGTAC
TCGATGAAAGCAATCATATTGTCTTAACCAATCCGGCAGCCAATACATTATTAGGTATCCATTTACCGATTTCATTAGAA
AAAACACCACTGATCAAATTACAACCAGACCTATTTGAATTGATTCAATTTAGTGATCTTAAAGATGGTGAAGAGTTTAG
TTTTGAGTCACAACAAAGCGCCTACACCATCAATGTTCGGGTTAAACATCTGCTTGTACCTGAACAGGCCTTAGTATTAT
TAATTTTAAAAGATGCACAGAAACTGACTCAGCAAGTTCAGCAACTAAAGCTTGCAGCACTTGGTCAGCTTTCTGCCAGT
ATTGCCCACGAAATTCGTAACCCTTTGGCCGCGATTGTGCAAGCCAATGAATTATTCAAAGACAGTGACCCACACCAACA
AGAAATGCTGTCACGCATGATCAGTAAACAGGCCAAACGGATTGATAGCATCGTGCAAGACACTTTGGCAATGGCACGGA
ATAAGCCAACAGAAGTACAAGAAATTGATCTAAGCTCCTTCTTTGAAAGTTTACTCAATGAAGATCTTGCCGATGCTAAA
CAACAAATTCAAATTAAACTAACAGAACAGGTCGGTATCTTATTTGACGAAAAACAATTACGCCAAGTGCTGATTAATTT
AATTAGAAATGCACTCCGACATAATGCAACTGACGCGCCTTATATTGAGGTCGAAGTACACGAAAAAGATGGTCGAACTT
GCATTGATGTCATCGATTTTGGGACGGGTGTCTCAAAACGAGATATTTCTCAACTGTTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTGTATTTGTCTCACACATTTTGTGAGGCCAATCATGCAAAGCTCACCTATATAGAGCG
ACAACAAGGAGCATGCTTCAGGATTGAATGCTCTAAAATTCATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.504

99.04

0.649

Multiple sequence alignment