Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FPL17_RS03110 Genome accession   NZ_CP041970
Coordinates   743569..744276 (-) Length   235 a.a.
NCBI ID   WP_005187555.1    Uniprot ID   -
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 738569..749276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS03090 (FPL17_03130) - 739110..739934 (+) 825 WP_005212933.1 SDR family NAD(P)-dependent oxidoreductase -
  FPL17_RS03095 (FPL17_03135) - 740028..741548 (+) 1521 WP_151715330.1 flavin-containing monooxygenase -
  FPL17_RS03100 (FPL17_03140) - 741644..742522 (+) 879 WP_159883166.1 class I SAM-dependent methyltransferase -
  FPL17_RS03105 (FPL17_03145) - 742591..743367 (-) 777 WP_005187552.1 M48 family metallopeptidase -
  FPL17_RS03110 (FPL17_03150) crp 743569..744276 (-) 708 WP_005187555.1 cAMP-activated global transcriptional regulator CRP Regulator
  FPL17_RS03115 (FPL17_03155) - 744425..744847 (+) 423 WP_005295012.1 OsmC family protein -
  FPL17_RS03120 (FPL17_03160) - 744919..745719 (-) 801 WP_159883168.1 M23 family metallopeptidase -
  FPL17_RS03125 (FPL17_03165) clpB 745980..748559 (+) 2580 WP_005212922.1 ATP-dependent chaperone ClpB -
  FPL17_RS03130 (FPL17_03170) - 748730..749176 (+) 447 WP_005212921.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26583.21 Da        Isoelectric Point: 4.7528

>NTDB_id=375065 FPL17_RS03110 WP_005187555.1 743569..744276(-) (crp) [Acinetobacter dispersus strain NCCP 16014]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTAIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENTFTEEEYDEED

Nucleotide


Download         Length: 708 bp        

>NTDB_id=375065 FPL17_RS03110 WP_005187555.1 743569..744276(-) (crp) [Acinetobacter dispersus strain NCCP 16014]
ATGACTTCAAATTTTTCACAACTTAGCACTGATGCTTTGTCTCCAGGTCAACTACCTGAATCAGTTAAAGCATTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCGCGATTGTTGACGCTGGAACTGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCAGTGTCAATTATTTTACGTGAAGATGATGAACGTGAAATCGTCGTTGCCTACTTAAACCCAGGTGACTTC
TTTGGTGAAATGGGGCTTTTTGAAAAGAACCCTCAGCGTACCGCAGAAGTACGTACTAGAGATGTATGTGAAATTGCAGA
AATTTCTTATGACAATTTCCATGAGTTAAGTAAACAATACCCAGATCTAAGTTACGCTGTGTTTGCTCAACTGGTACGTC
GCCTTAAAAATACAACGCGTAAAGTCACAGATCTTGCATTCATCGACGTATCTGGTCGTATCGCTCGCTGTTTAATTGAC
TTATCTGCGCAACCTGAAGCAATGATTTTGCCGAATGGTCGTCAGATTCGTATTACACGTCAAGAAATTGGTCGTATCGT
GGGTTGTTCTCGTGAAATGGTTGGACGCGTACTCAAAACGCTTGAAGATCAAGGCATGATTCAAACTGATGGTAAGGCAA
TCTTAATTTTTGATGCTTCTTTGGAAGAAAATACTTTTACTGAAGAAGAATATGATGAAGAGGATTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

95.319

100

0.953
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404

Multiple sequence alignment