Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BSEL_RS16755 Genome accession   NC_014219
Coordinates   3578020..3578556 (-) Length   178 a.a.
NCBI ID   WP_013174196.1    Uniprot ID   D6Y1K5
Organism   [Bacillus] selenitireducens MLS10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3573020..3583556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSEL_RS16735 (Bsel_3306) rplI 3574284..3574727 (-) 444 WP_013174192.1 50S ribosomal protein L9 -
  BSEL_RS16740 (Bsel_3307) - 3574724..3576697 (-) 1974 WP_013174193.1 DHH family phosphoesterase -
  BSEL_RS16745 (Bsel_3308) - 3576710..3577642 (-) 933 WP_013174194.1 YybS family protein -
  BSEL_RS16750 (Bsel_3309) rpsR 3577736..3577963 (-) 228 WP_013174195.1 30S ribosomal protein S18 -
  BSEL_RS16755 (Bsel_3310) ssbA 3578020..3578556 (-) 537 WP_013174196.1 single-stranded DNA-binding protein Machinery gene
  BSEL_RS16760 (Bsel_3311) rpsF 3578613..3578900 (-) 288 WP_013174197.1 30S ribosomal protein S6 -
  BSEL_RS16765 (Bsel_3312) ychF 3579128..3580228 (-) 1101 WP_013174198.1 redox-regulated ATPase YchF -
  BSEL_RS16770 (Bsel_3313) - 3580315..3580512 (-) 198 WP_041582044.1 DUF951 domain-containing protein -
  BSEL_RS16775 (Bsel_3314) - 3580547..3581257 (-) 711 WP_013174200.1 DUF554 domain-containing protein -
  BSEL_RS16780 (Bsel_3315) - 3581267..3582418 (-) 1152 WP_013174201.1 aminotransferase class V-fold PLP-dependent enzyme -
  BSEL_RS16785 (Bsel_3316) - 3582506..3583378 (-) 873 WP_013174202.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19536.25 Da        Isoelectric Point: 4.6207

>NTDB_id=37502 BSEL_RS16755 WP_013174196.1 3578020..3578556(-) (ssbA) [[Bacillus] selenitireducens MLS10]
MINRVVLVGRLTKDPELRYTANGVAVTSFTLAVNRPFSNQQGEREADFINIVVWRKQAENVANFLNKGSLAGVDGRIQTR
NYENNEGRRVFVTEVVGESVQFLEPKGSSGGGQGGQQRYAPQNEQPAGYGQQQSAPNQYQNQNQGYSGNQGQSSPQPDND
PFASDGKPIDINDDDLPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=37502 BSEL_RS16755 WP_013174196.1 3578020..3578556(-) (ssbA) [[Bacillus] selenitireducens MLS10]
ATGATTAACCGTGTCGTCCTGGTGGGACGTTTAACAAAAGATCCTGAACTGCGTTATACAGCGAACGGTGTGGCGGTAAC
GTCCTTCACCCTTGCTGTGAATCGTCCTTTCTCAAACCAGCAGGGAGAGAGAGAAGCCGATTTCATCAATATTGTTGTTT
GGCGAAAGCAAGCTGAAAACGTGGCGAATTTCCTTAATAAAGGAAGTCTTGCAGGCGTTGATGGACGAATTCAGACCAGA
AATTATGAAAATAATGAAGGACGACGGGTTTTCGTGACAGAAGTGGTTGGAGAGAGTGTTCAGTTCCTTGAACCGAAAGG
CTCCTCCGGCGGCGGACAGGGTGGTCAGCAGCGGTATGCACCGCAAAATGAACAGCCTGCAGGTTACGGTCAACAGCAAT
CAGCTCCGAACCAGTACCAAAATCAAAATCAGGGTTATTCCGGAAATCAGGGCCAGTCATCACCACAGCCTGATAACGAT
CCGTTTGCCAGTGATGGAAAACCGATCGATATCAACGATGATGATCTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D6Y1K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.171

100

0.674
  ssb Latilactobacillus sakei subsp. sakei 23K

52.778

100

0.534
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

59.551

0.371

Multiple sequence alignment