Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   FOV14_RS16625 Genome accession   NZ_CP041784
Coordinates   3400633..3402018 (-) Length   461 a.a.
NCBI ID   WP_057080261.1    Uniprot ID   -
Organism   Bacillus velezensis strain IM1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3395633..3407018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOV14_RS16590 (FOV14_16745) flgL 3395808..3396725 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  FOV14_RS16595 (FOV14_16750) flgK 3396737..3398254 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  FOV14_RS16600 (FOV14_16755) - 3398270..3398752 (-) 483 WP_003151394.1 flagellar protein FlgN -
  FOV14_RS16605 (FOV14_16760) flgM 3398767..3399033 (-) 267 WP_057080258.1 flagellar biosynthesis anti-sigma factor FlgM -
  FOV14_RS16610 (FOV14_16765) - 3399103..3399522 (-) 420 WP_057080259.1 TIGR03826 family flagellar region protein -
  FOV14_RS16615 (FOV14_16770) comFC 3399596..3400285 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  FOV14_RS16620 (FOV14_16775) - 3400291..3400575 (-) 285 WP_057080260.1 competence protein ComFB -
  FOV14_RS16625 (FOV14_16780) comFA 3400633..3402018 (-) 1386 WP_057080261.1 DEAD/DEAH box helicase Machinery gene
  FOV14_RS16630 (FOV14_16785) - 3402126..3402974 (-) 849 WP_003151387.1 DegV family protein -
  FOV14_RS16635 (FOV14_16790) degU 3403072..3403761 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  FOV14_RS16640 (FOV14_16795) degS 3403838..3405001 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  FOV14_RS16645 (FOV14_16800) - 3405224..3405871 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52588.03 Da        Isoelectric Point: 10.2737

>NTDB_id=374325 FOV14_RS16625 WP_057080261.1 3400633..3402018(-) (comFA) [Bacillus velezensis strain IM1]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINRFIEKEHITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENRWRPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGMTNGMKKAKKHIELMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=374325 FOV14_RS16625 WP_057080261.1 3400633..3402018(-) (comFA) [Bacillus velezensis strain IM1]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACCGTTTTATAGAAAAAGAGCATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAGGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACTTATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627

Multiple sequence alignment