Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | FFE90_RS13440 | Genome accession | NZ_CP041757 |
| Coordinates | 2552242..2552577 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus sp. KBS0812 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2547242..2557577
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FFE90_RS13420 (FFE90_013420) | gcvT | 2547834..2548922 (-) | 1089 | WP_004398598.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| FFE90_RS13425 (FFE90_013425) | - | 2549364..2551037 (+) | 1674 | WP_004398544.1 | DEAD/DEAH box helicase | - |
| FFE90_RS13430 (FFE90_013430) | - | 2551058..2551852 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| FFE90_RS13435 (FFE90_013435) | sinI | 2552035..2552208 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| FFE90_RS13440 (FFE90_013440) | sinR | 2552242..2552577 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| FFE90_RS13445 (FFE90_013445) | tasA | 2552670..2553455 (-) | 786 | WP_004398632.1 | biofilm matrix protein TasA | - |
| FFE90_RS13450 (FFE90_013450) | sipW | 2553519..2554091 (-) | 573 | WP_003246088.1 | signal peptidase I SipW | - |
| FFE90_RS13455 (FFE90_013455) | tapA | 2554075..2554836 (-) | 762 | WP_004399106.1 | amyloid fiber anchoring/assembly protein TapA | - |
| FFE90_RS13460 (FFE90_013460) | - | 2555108..2555434 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| FFE90_RS13465 (FFE90_013465) | - | 2555476..2555655 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| FFE90_RS13470 (FFE90_013470) | comGG | 2555726..2556100 (-) | 375 | WP_003230170.1 | ComG operon protein ComGG | Machinery gene |
| FFE90_RS13475 (FFE90_013475) | comGF | 2556101..2556484 (-) | 384 | WP_003230168.1 | ComG operon protein ComGF | Machinery gene |
| FFE90_RS13480 (FFE90_013480) | comGE | 2556510..2556857 (-) | 348 | WP_003230165.1 | ComG operon protein 5 | Machinery gene |
| FFE90_RS13485 (FFE90_013485) | comGD | 2556841..2557272 (-) | 432 | WP_004398628.1 | comG operon protein ComGD | Machinery gene |
| FFE90_RS13490 (FFE90_013490) | comGC | 2557262..2557558 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=373818 FFE90_RS13440 WP_003226345.1 2552242..2552577(+) (sinR) [Bacillus sp. KBS0812]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=373818 FFE90_RS13440 WP_003226345.1 2552242..2552577(+) (sinR) [Bacillus sp. KBS0812]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |