Detailed information NTG0373724

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: FFH90_RS08535
• Genome accession: NZ_CP041753
• Coordinates: 1885960..1888194 (+)
• Length: 744 a.a.
• NCBI ID: WP_138866992.1
• Uniprot ID: -
• Organism: Pseudomonas sp. ATCC 43928
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1880960..1893194

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FFH90_RS08510 (FFH90_008510)	-	1882062..1882721 (+)	660	WP_064616568.1	transglutaminase family protein	-
FFH90_RS08515 (FFH90_008515)	-	1882765..1883388 (+)	624	WP_018926240.1	glutathione S-transferase family protein	-
FFH90_RS08520 (FFH90_008520)	-	1883522..1884454 (+)	933	WP_018926239.1	ABC transporter ATP-binding protein	-
FFH90_RS08525 (FFH90_008525)	-	1884451..1885230 (+)	780	WP_018926238.1	ABC transporter permease	-
FFH90_RS08530 (FFH90_008530)	-	1885302..1885823 (-)	522	WP_018926237.1	DUF2062 domain-containing protein	-
FFH90_RS08535 (FFH90_008535)	comA	1885960..1888194 (+)	2235	WP_138866992.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
FFH90_RS08540 (FFH90_008540)	exbB	1888292..1888927 (+)	636	WP_007941964.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
FFH90_RS08545 (FFH90_008545)	-	1888924..1889352 (+)	429	WP_018926235.1	biopolymer transporter ExbD	-
FFH90_RS08550 (FFH90_008550)	lpxK	1889352..1890362 (+)	1011	WP_138866993.1	tetraacyldisaccharide 4'-kinase	-
FFH90_RS08555 (FFH90_008555)	-	1890388..1890573 (+)	186	WP_003179363.1	Trm112 family protein	-
FFH90_RS08560 (FFH90_008560)	kdsB	1890570..1891334 (+)	765	WP_018926233.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
FFH90_RS08565 (FFH90_008565)	-	1891334..1891798 (+)	465	WP_018926232.1	low molecular weight protein-tyrosine-phosphatase	-
FFH90_RS08570 (FFH90_008570)	murB	1891795..1892814 (+)	1020	WP_018926231.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81635.87 Da
• Isoelectric Point: 9.9613

>NTDB_id=373724 FFH90_RS08535 WP_138866992.1 1885960..1888194(+) (comA) [Pseudomonas sp. ATCC 43928]
MRTGMMALALGLLALRFLPALPPAGLWLLLPVVGLMLLPFRTFPLAFWLFGFSWACANAQWALDDRLALKLDGETRWVEG
RVTGLPQQAEGVVRFELTDSQSRRTQLPRHLRLAWYGGPPVNSGERWRLAVKLKRPAGLLNPHGFDYDAWLLAQRIGATG
TVKDGQRLGQAQWAWRDGIRQRLQAVDAHGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPRRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACLMIGLLLLWRLRFRHLGAWWPLLLALDGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPLANLLAVPWISLLVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDLLFKGLALVAGQLPAWVPVAVPLWVWAFGALGAFLLLLPPGVPLRPLGWPMLLLLV
FAPRHTLPEGVAEIWQLDVGQGLAILVRTRHHTLLYDAGPRFGDIDLGERVVLPTLRKLGVNGLDLMLISHADADHAGGA
RAIASGVPVTRVLSGDPLALPDELHAEGCESGQQWTWDDVRFQLWQWSSASDSNQKSCVLQIEANGERLLLTGDIDTAAE
RVLLDSPLAVPTDWLQAPHHGSRSSSSMALLSALLPKAVLISRGNGNSFGHPHPTVVARYQKRGMAIYDSAEQGAIRLQL
GRFKPPWTMLQERRFWRDPPALRQ

Nucleotide

• Length: 2235 bp

>NTDB_id=373724 FFH90_RS08535 WP_138866992.1 1885960..1888194(+) (comA) [Pseudomonas sp. ATCC 43928]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGCTGGCCCTGCGTTTTTTGCCGGCACTGCCGCCGGCAGGGTTGTG
GCTGTTGTTGCCGGTAGTGGGTTTGATGTTGCTGCCGTTTCGAACCTTTCCACTGGCATTTTGGTTGTTCGGTTTCAGTT
GGGCGTGTGCGAATGCGCAGTGGGCGCTGGATGATCGCCTGGCGCTGAAGCTCGATGGCGAGACTCGCTGGGTCGAAGGC
CGGGTTACCGGGTTGCCGCAGCAGGCCGAGGGTGTAGTGCGTTTCGAACTGACAGACAGTCAGTCGCGTCGCACCCAACT
GCCCCGGCACCTGCGTCTGGCCTGGTATGGCGGGCCGCCCGTCAACAGTGGCGAGCGGTGGCGGCTGGCAGTCAAATTGA
AGCGTCCTGCCGGGCTGCTCAACCCTCATGGTTTTGATTACGACGCCTGGTTGCTGGCCCAACGTATTGGCGCCACTGGG
ACCGTCAAGGACGGTCAGCGACTGGGGCAAGCGCAGTGGGCCTGGCGCGACGGCATTCGTCAGCGTTTGCAGGCCGTGGA
TGCGCACGGGCGAACGGGAGCGCTGACGGCGTTGGTGCTGGGGGACGGCGCCGGGCTGAGCCGTGAGGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATCTGTTGGTGATTTCCGGGCAGCACATTGGTTTGCTGGCGGGGCTGGTGTATCTGCTG
ATCGCCGGGCTGGCGCGCTATGGCTTATGGCCCAGGCGCTTGCCGTGGCTGCCATGGGCGTGTGGGCTGGCGTTCGCGGC
AGCGCTCGGTTATGGGCTGCTGGCCGGTTTCGAGGTGCCGGTGCGTCGGGCCTGCCTGATGATTGGTCTGCTGTTGTTGT
GGCGGCTACGGTTTCGTCACCTCGGCGCCTGGTGGCCGCTGTTGCTGGCGCTTGACGGTGTTTTGCTGCTGGACCCGCTG
GCAAGCCTGCAACCGGGTTTCTGGTTGTCCTTTGCGGCAGTAGCGGTGCTGATTTTCACCTTTGGCGGGCGATTGGGCCC
GTGGCGTTGGTGGCAAACCTGGACCCGTGCCCAATGGCTGATCGCAATCGGTCTGTGCCCGCTGCTGTTGGTACTGGGGT
TGCCTATCAGTCTCAGCGGGCCGCTGGCCAATCTTCTGGCGGTGCCCTGGATCAGCCTGCTGGTCTTGCCGCCGGCCTTG
CTCGGAACGCTGCTGTTGCCCGTTCCCTATGTGGGCGAGGGGTTACTGTGGTTGGCTGGCGGTCTGATCGACCTTTTGTT
CAAGGGGCTGGCGTTGGTGGCCGGGCAATTGCCCGCGTGGGTGCCGGTGGCGGTTCCGTTGTGGGTTTGGGCGTTCGGCG
CACTGGGCGCATTTCTGCTGTTACTGCCACCGGGCGTGCCGTTGCGCCCGCTGGGCTGGCCGATGTTGCTGTTGCTGGTT
TTTGCGCCCCGGCACACGCTGCCTGAAGGCGTCGCCGAAATCTGGCAGCTGGATGTCGGCCAGGGGTTGGCCATTCTGGT
GCGCACCCGCCATCACACGCTGTTGTATGACGCCGGGCCACGGTTCGGTGATATCGACCTGGGTGAGCGGGTGGTGTTGC
CAACATTGCGCAAACTGGGGGTGAATGGACTTGATCTGATGCTGATCAGCCATGCCGACGCCGATCACGCCGGCGGTGCG
CGAGCGATTGCCAGCGGTGTGCCGGTGACTCGGGTACTGAGTGGCGACCCACTGGCCCTGCCGGACGAGCTACATGCCGA
GGGCTGCGAGAGCGGTCAACAGTGGACCTGGGACGACGTGCGGTTCCAGCTCTGGCAGTGGTCGTCGGCCAGCGACAGCA
ATCAGAAATCCTGCGTGCTGCAGATCGAAGCCAACGGCGAGCGGTTGCTGCTGACCGGCGATATCGATACCGCGGCCGAG
CGGGTGCTGCTCGACAGTCCACTGGCGGTGCCGACGGACTGGTTGCAGGCCCCGCACCACGGCAGTCGCAGTTCATCTTC
GATGGCGTTGCTCAGCGCTCTGCTGCCTAAAGCGGTGCTGATTTCCCGTGGCAACGGTAATTCTTTCGGTCATCCCCATC
CCACAGTCGTGGCGCGTTATCAAAAGCGTGGCATGGCGATCTACGACAGCGCCGAGCAGGGTGCCATTCGTCTACAACTG
GGGCGCTTCAAACCACCTTGGACGATGCTTCAGGAACGGCGTTTCTGGCGCGATCCGCCAGCATTGCGCCAGTAG

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-680)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.839	96.64	0.617
comA	Ralstonia pseudosolanacearum GMI1000	33.573	100	0.376