Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   FFH90_RS08540 Genome accession   NZ_CP041753
Coordinates   1888292..1888927 (+) Length   211 a.a.
NCBI ID   WP_007941964.1    Uniprot ID   J2VZZ3
Organism   Pseudomonas sp. ATCC 43928     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1883292..1893927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFH90_RS08520 (FFH90_008520) - 1883522..1884454 (+) 933 WP_018926239.1 ABC transporter ATP-binding protein -
  FFH90_RS08525 (FFH90_008525) - 1884451..1885230 (+) 780 WP_018926238.1 ABC transporter permease -
  FFH90_RS08530 (FFH90_008530) - 1885302..1885823 (-) 522 WP_018926237.1 DUF2062 domain-containing protein -
  FFH90_RS08535 (FFH90_008535) comA 1885960..1888194 (+) 2235 WP_138866992.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FFH90_RS08540 (FFH90_008540) exbB 1888292..1888927 (+) 636 WP_007941964.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FFH90_RS08545 (FFH90_008545) - 1888924..1889352 (+) 429 WP_018926235.1 biopolymer transporter ExbD -
  FFH90_RS08550 (FFH90_008550) lpxK 1889352..1890362 (+) 1011 WP_138866993.1 tetraacyldisaccharide 4'-kinase -
  FFH90_RS08555 (FFH90_008555) - 1890388..1890573 (+) 186 WP_003179363.1 Trm112 family protein -
  FFH90_RS08560 (FFH90_008560) kdsB 1890570..1891334 (+) 765 WP_018926233.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FFH90_RS08565 (FFH90_008565) - 1891334..1891798 (+) 465 WP_018926232.1 low molecular weight protein-tyrosine-phosphatase -
  FFH90_RS08570 (FFH90_008570) murB 1891795..1892814 (+) 1020 WP_018926231.1 UDP-N-acetylmuramate dehydrogenase -
  FFH90_RS08575 (FFH90_008575) - 1893057..1893527 (+) 471 WP_007941956.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22911.14 Da        Isoelectric Point: 6.8770

>NTDB_id=373725 FFH90_RS08540 WP_007941964.1 1888292..1888927(+) (exbB) [Pseudomonas sp. ATCC 43928]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=373725 FFH90_RS08540 WP_007941964.1 1888292..1888927(+) (exbB) [Pseudomonas sp. ATCC 43928]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGCGCCAGCCGCGTGACCCCGGAGCACTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTCAATAAAGAAAAACTCAAGGAGTTGCGCGCCAACTCTCCGCTGGGCGAGATCCTCGCCGCCGGTCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTGATTCATGAGCTCGAACGTTATAT
CAACGCCTTGGGCACCATCGCCGCCATGGCTCCGTTGTTGGGGCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTGCGTTCATGGGCACGGGCATGGGCACCAACGCCGCGGTGCTGGCCGGGGGTATTTCCAAGGCACTGATCACCACCGCC
GCGGGCCTGATGGTCGGTATCCCGGCCGTGTTCTTCCACCGCTTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAAGAGGCGATCAAACTGGTCGAGGTTATTCAGGGCGATCGCGACGTGGACCTGGCCGAGGGTAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2VZZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment