Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FNU76_RS13480 Genome accession   NZ_CP041730
Coordinates   2990852..2992210 (-) Length   452 a.a.
NCBI ID   WP_144278686.1    Uniprot ID   A0A516SGK4
Organism   Chitinimonas arctica strain R3-44     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2985852..2997210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNU76_RS24125 - 2986368..2986526 (-) 159 WP_179958113.1 hypothetical protein -
  FNU76_RS13450 (FNU76_13450) - 2986725..2987201 (-) 477 WP_144278680.1 peptidylprolyl isomerase -
  FNU76_RS13455 (FNU76_13455) - 2987354..2987734 (+) 381 WP_144278681.1 DUF2237 family protein -
  FNU76_RS13460 (FNU76_13460) can 2987734..2988381 (+) 648 WP_144278682.1 carbonate dehydratase -
  FNU76_RS13465 (FNU76_13465) - 2988501..2989769 (+) 1269 WP_144278683.1 Hsp70 family protein -
  FNU76_RS13470 (FNU76_13470) - 2989960..2990502 (+) 543 WP_144278684.1 hypothetical protein -
  FNU76_RS13475 (FNU76_13475) - 2990499..2990693 (+) 195 WP_144278685.1 hypothetical protein -
  FNU76_RS13480 (FNU76_13480) pilR 2990852..2992210 (-) 1359 WP_144278686.1 sigma-54 dependent transcriptional regulator Regulator
  FNU76_RS13485 (FNU76_13485) - 2992207..2993790 (-) 1584 WP_144278687.1 nitrogen regulation protein NR(II) -
  FNU76_RS13490 (FNU76_13490) yedA 2993983..2994855 (+) 873 WP_144278688.1 drug/metabolite exporter YedA -
  FNU76_RS13495 (FNU76_13495) - 2994874..2996736 (-) 1863 WP_144278689.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49657.76 Da        Isoelectric Point: 5.7684

>NTDB_id=373603 FNU76_RS13480 WP_144278686.1 2990852..2992210(-) (pilR) [Chitinimonas arctica strain R3-44]
MSKRNNKPPRILVVDDEPDLRELVELTLLKMGLDVDMADGVAAAKARLDAGGIDLCLTDMRMGDGSGLDVVRHIEARGYD
IPVAVITAYGSLDNAVEALKAGAFDYLAKPVSLEQLRTLVRSALELDKPAGSKPATSADRTFIGDSPAIRHALQLIDRLA
KSQAPVYITGESGSGKERAARLIHSQSNRNSQPFVPVNCGAIPENLMESEFFGSKKGAYTGADTERDGFFQAAHGGTLFL
DEVADLPLAMQVKLLRAIQEKHVRKLGDTKETAIDVRIICATHQNLAKCVDEGRFRQDLYYRLNVIELKMPPLREMREDV
AGIAHGLLARLASQNGMDEPKLGPDALQALAAYDFPGNVRELENILERALALCDGKQIRLADLQLSRSDSDESTPSAAIG
DKYPLQDYLDRMEKEAILEALDKTRFNRTQAAKILGVTFRSLRYRMERLSIS

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=373603 FNU76_RS13480 WP_144278686.1 2990852..2992210(-) (pilR) [Chitinimonas arctica strain R3-44]
ATGAGCAAACGCAACAATAAGCCCCCTCGTATCCTGGTCGTCGATGACGAGCCCGATCTACGCGAACTGGTTGAATTGAC
CCTGCTCAAGATGGGCCTGGACGTCGACATGGCCGATGGCGTGGCCGCGGCAAAGGCCCGCCTGGACGCGGGCGGCATTG
ACCTATGCCTGACCGATATGCGCATGGGCGACGGTTCCGGCCTGGACGTGGTACGCCATATCGAGGCGCGCGGCTACGAC
ATCCCCGTCGCCGTCATCACCGCTTACGGCAGCCTGGACAATGCGGTGGAAGCGCTTAAAGCCGGCGCGTTCGACTATCT
GGCCAAGCCAGTCTCGCTGGAGCAGCTGCGTACCCTGGTACGCTCGGCCCTGGAACTGGATAAACCGGCCGGCAGCAAAC
CCGCTACCAGTGCGGATCGCACCTTTATCGGCGACTCGCCCGCCATTCGCCACGCACTGCAACTGATAGACCGCCTGGCC
AAGAGCCAGGCCCCGGTCTATATCACCGGCGAGTCGGGCAGCGGCAAGGAACGGGCTGCCAGGCTGATTCATAGCCAGTC
CAACCGGAACAGCCAGCCATTTGTCCCGGTCAACTGCGGCGCTATCCCGGAAAACCTGATGGAAAGCGAGTTCTTCGGTA
GTAAGAAAGGCGCCTACACCGGCGCCGATACCGAGCGGGACGGGTTTTTCCAGGCGGCCCATGGTGGCACACTCTTTCTG
GACGAGGTCGCCGACCTGCCGTTGGCCATGCAGGTCAAACTATTGCGCGCCATCCAGGAAAAGCACGTGCGCAAACTGGG
CGACACCAAGGAAACCGCCATCGATGTGCGCATCATCTGCGCCACCCACCAGAACCTGGCCAAGTGCGTGGACGAAGGCC
GCTTCCGCCAGGACTTGTATTACCGCTTGAATGTGATCGAACTGAAGATGCCTCCCTTGCGCGAGATGCGCGAGGATGTG
GCGGGGATTGCGCATGGCTTGCTGGCGCGGCTGGCCAGCCAGAACGGCATGGATGAACCCAAGCTGGGTCCCGATGCCTT
GCAGGCATTGGCCGCCTACGATTTCCCCGGCAATGTGCGCGAACTGGAAAATATCCTGGAAAGGGCGCTGGCGCTCTGCG
ACGGAAAGCAGATCCGCCTGGCCGACCTGCAGCTGAGCCGCAGCGACAGCGACGAATCAACCCCGTCGGCCGCCATCGGC
GACAAATACCCGCTGCAGGACTATTTAGACCGGATGGAGAAGGAAGCCATCCTGGAGGCCCTGGACAAGACCCGTTTCAA
TCGCACTCAGGCGGCAAAGATCCTGGGCGTGACCTTCCGCTCGCTACGGTATCGGATGGAGCGCCTGAGTATTTCCTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(409-448)

Response regulator receiver domain (Response_reg)

(11-120)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516SGK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.692

97.788

0.564
  pilR Acinetobacter baumannii strain A118

44.13

100

0.449
  luxO Vibrio cholerae strain A1552

39.952

91.372

0.365

Multiple sequence alignment