Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   G6M86_RS05675 Genome accession   NZ_CP049216
Coordinates   1154697..1156802 (-) Length   701 a.a.
NCBI ID   WP_003515741.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Q15/94     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1149697..1161802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6M86_RS05645 (G6M86_05655) glmS 1150708..1152534 (+) 1827 WP_003515753.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  G6M86_RS05650 (G6M86_05660) - 1152531..1153034 (+) 504 WP_065702432.1 GNAT family N-acetyltransferase -
  G6M86_RS05655 (G6M86_05665) - 1153048..1153716 (+) 669 WP_003515749.1 DUF502 domain-containing protein -
  G6M86_RS05660 (G6M86_05670) - 1153720..1154103 (-) 384 WP_035198363.1 type II toxin-antitoxin system VapC family toxin -
  G6M86_RS05665 (G6M86_05675) - 1154100..1154357 (-) 258 WP_003515745.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  G6M86_RS05670 (G6M86_05680) - 1154412..1154684 (-) 273 WP_003515743.1 hypothetical protein -
  G6M86_RS05675 (G6M86_05685) recG 1154697..1156802 (-) 2106 WP_003515741.1 ATP-dependent DNA helicase RecG Machinery gene
  G6M86_RS05680 (G6M86_05690) - 1156990..1157301 (+) 312 WP_003515739.1 succinate dehydrogenase assembly factor 2 -
  G6M86_RS05685 (G6M86_05695) mfd 1157305..1160802 (+) 3498 WP_065702434.1 transcription-repair coupling factor -
  G6M86_RS05690 (G6M86_05700) - 1161176..1161520 (+) 345 WP_013636325.1 hypothetical protein -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76563.20 Da        Isoelectric Point: 7.1162

>NTDB_id=373321 G6M86_RS05675 WP_003515741.1 1154697..1156802(-) (recG) [Agrobacterium tumefaciens strain Q15/94]
MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRENADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ
PAPPGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSESENLPLVEAV
YPMTAGLSPKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPIRAKGDIAAKILSQLPFSLTPSQNASVKDILTDMASEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHFATISKLANAAGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL
KEGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGVNIGLIHGRMSGPEKDAAMLAFKNGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=373321 G6M86_RS05675 WP_003515741.1 1154697..1156802(-) (recG) [Agrobacterium tumefaciens strain Q15/94]
ATGCGTCCCGCCATTCTCGATCCGCTATTTGCTTCCGTCTCCACCCTTGCCGGTGTGGGGCCGAAGCTTGCCGACCTTCT
GGCCAAACTGCTGAGCCGGGAAAATGCCGACGACACCCGCGTGATCGATCTTCTGTTCCACGCGCCATCAAACGTCATCG
ACCGGCGCAACCGCCCGGGCATCGCGCTTGCCGCTCCCGGCGCCATTGTCACCATTCAGGGACGTGTCGACCGGCATCAG
CCAGCTCCACCAGGCAATCGTTCCGCGCCCTACCGTGTTTTCCTGCATGACGAGACCGGGGAACTGGCGCTGACCTTCTT
CCGCGCCAAGGGAGACTGGCTTTCCAAGGCCTTGCCCGTCGATGAAGAGGTTCTCGTCAGCGGCAAGGTGGACTGGTTCA
ACGGCCGCGCCTCCATGGTGCATCCGGATTTCATGGTGAAGCTTTCCGAATCCGAGAACCTGCCGCTGGTCGAAGCCGTT
TATCCAATGACAGCCGGGCTGTCTCCGAAGGTGCTGCGGCGGGCAATTGAAGGCGGACTTTCGAAACTGCCGGTCTTTCC
CGAATGGATCGACGAAACGCTGAAGACCCGGCAGGGGTTCGGCGACGTGGCATCGAGCTTCCGTGAGTTGCACGATCCGC
GCGACAGCGCCGATATCGATCCTCAGGCCCCGGCACGCAGACGGCTCGCCTACGACGAATTTCTGGCCGGGCAGCTGTCA
CTGGCGCTGGTGCGGCAAAGACTGCGCAAGGTCGCGGGCCAGCCGATCCGCGCCAAGGGGGACATTGCTGCAAAAATCCT
GTCGCAACTCCCCTTCTCCCTGACGCCGAGCCAGAATGCCTCGGTGAAAGATATCCTGACCGATATGGCCAGCGAGGACC
GTATGTTGCGGCTGTTGCAGGGCGATGTCGGCGCGGGCAAGACGCTGGTGGCGCTGATGGCTATGGCAACCGCCGTCGAG
GCCGGCGGACAGGCGGTGTTGATGGCCCCGACCGAAATTCTTGCCCGGCAGCATTTCGCCACCATCTCCAAACTCGCCAA
TGCCGCGGGCATCACGGTTGAGGTGCTGACCGGCCGCACCAAGGGCAAGGAGCGTCGCGAGATCGAAGAACGCGTGGCCT
CCGGTGAGGCACAGATCGTCATCGGCACGCACGCGCTGTTCCAGGACAGCGTGAGTTACAAGAACCTCGTGCTGGCCGTG
GTGGATGAGCAGCACCGTTTCGGCGTACACCAGCGCCTGCGTCTCACCGCCAAGGGCATCACGCCGCATATGCTTGTTAT
GACCGCCACGCCCATTCCGCGCACGCTGGTGCTGGCCGCCTTCGGCGACATGGATGTATCAAAACTCACCGAAAAACCGG
CTGGCCGAAAACCCATCCAGACCGTGACAATCCCCACAGAGCGCATCGGCGACATCGTCGAGCGGCTGCGCGCCGCGCTG
AAGGAGGGCAAGAAGGCCTACTGGATCTGCCCGCTGGTGGAGGAGACGGAAGAGTCCGACCTGATGTCGGCGGAAGAACG
ACATGCGGTTCTCTCGCAGATGCTCGGTGTCAATATCGGTCTCATCCATGGGCGCATGAGCGGCCCGGAGAAGGACGCCG
CCATGCTGGCTTTCAAGAACGGCGAAACCCGGCTGCTGGTGGCAACGACAGTGGTGGAAGTGGGTGTCGACGTTCCGGAC
GCCACGATCATGGTCATCGAACATGCCGAACGTTTCGGCCTGGCTCAGCTTCACCAGCTGCGTGGCCGGGTTGGACGCGG
TGACGAGGCCTCCACCTGCATCCTGCTCTACAAGGGGCCGCTCAGCGAAAACGGCCGCGCCCGACTTTCCATCCTGCGCG
ACAGCGAGGACGGCTTCCTGATTGCGGAAGAGGATTTGAAGCTGCGCGGCGAAGGCGAACTCCTCGGCACCCGCCAGTCC
GGCACCCCGGGCTTCCGCATCGCCAGCCTCGAAGCCCATGCCGACCTCCTGGAAATCGCCCGCAAGGACGCCGCCTATGT
CATCGAGCGCGACCCCGAACTGACCGGCCCGCGCGGCGAAAGCCTGCGCACCCTGCTCTATCTGCACCGCCGCGACGAAG
CTATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-681)

DEAD/DEAH box helicase (DEAD)

(275-432)

Helicase conserved C-terminal domain (Helicase_C)

(474-587)

RecG wedge domain (RecG_wedge)

(18-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

42.018

94.722

0.398
  recG/mmsA Streptococcus pneumoniae R6

40

97.004

0.388
  recG/mmsA Streptococcus pneumoniae R36A

40

97.004

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

38.663

98.146

0.379

Multiple sequence alignment