Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   VV7356_RS21265 Genome accession   NZ_CP041683
Coordinates   4724753..4725400 (+) Length   215 a.a.
NCBI ID   WP_017420064.1    Uniprot ID   A0A2S3SZL1
Organism   Vibrio vulnificus strain 7356     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4719753..4730400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS21255 (VV7356_21840) - 4721405..4723204 (-) 1800 WP_201443227.1 reverse transcriptase domain-containing protein -
  VV7356_RS21260 (VV7356_21845) ssb 4723914..4724453 (-) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  VV7356_RS21265 (VV7356_21850) qstR 4724753..4725400 (+) 648 WP_017420064.1 response regulator transcription factor Regulator
  VV7356_RS21270 (VV7356_21855) galU 4725586..4726458 (+) 873 WP_017789789.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VV7356_RS21275 (VV7356_21860) uvrA 4726602..4729424 (+) 2823 WP_026130603.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24730.69 Da        Isoelectric Point: 9.8565

>NTDB_id=373031 VV7356_RS21265 WP_017420064.1 4724753..4725400(+) (qstR) [Vibrio vulnificus strain 7356]
MRKSSYARKPFFISLQNEQTPEFVTVLAKQIQMEIPVITPATLMQADPNHRNRILLIDHQQHKVLLREIKNLPLIWKGFE
TVLCNVPNRLTTEELIGFGQCKAIFYRDTTIADMTKGLNSVINGKSWLPRDVSAQLIHYYRNMVCSHTSPVNVDLTMREI
QVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=373031 VV7356_RS21265 WP_017420064.1 4724753..4725400(+) (qstR) [Vibrio vulnificus strain 7356]
ATGAGAAAATCTTCTTACGCGCGGAAGCCATTTTTTATCAGTTTGCAAAACGAACAAACTCCTGAGTTCGTCACTGTATT
AGCTAAACAGATTCAAATGGAAATCCCTGTGATTACCCCGGCAACGCTCATGCAAGCTGATCCCAATCATCGTAATCGCA
TCTTATTAATTGATCATCAGCAACATAAGGTGCTGTTGAGAGAAATTAAAAACCTACCCCTGATATGGAAAGGGTTTGAA
ACGGTCCTGTGTAATGTACCTAACCGATTGACGACTGAGGAACTGATTGGCTTTGGCCAGTGCAAAGCGATCTTCTACCG
AGACACCACCATTGCAGACATGACCAAAGGACTAAATTCGGTGATTAATGGTAAGAGCTGGCTGCCACGCGACGTCAGCG
CACAACTCATCCACTACTATCGAAATATGGTTTGCTCACACACTTCACCAGTGAATGTGGATCTCACGATGAGAGAAATT
CAAGTGCTACGCTGCGTGCAGTCTGGCAAATCAAATTCTCAAATCGCCGAAGATCTTTTCATTAGCGAGTTCACCGTAAA
GTCGCATCTCTATCAAACCTTTAGAAAGCTTTCCGTGAAGAATCGTGTCCAAGCGGCCGCGTGGGCTGACCAAAACTTGA
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S3SZL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

60.93

100

0.609
  qstR Vibrio campbellii strain DS40M4

60.93

100

0.609
  qstR Vibrio cholerae strain A1552

46.729

99.535

0.465

Multiple sequence alignment