Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   CVULP_RS06995 Genome accession   NZ_CP041617
Coordinates   1357344..1357979 (-) Length   211 a.a.
NCBI ID   WP_372712702.1    Uniprot ID   -
Organism   Campylobacter vulpis strain 251/13     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1352344..1362979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVULP_RS06970 (CVULP_1361) - 1353953..1354282 (+) 330 WP_099507255.1 rhodanese-like domain-containing protein -
  CVULP_RS06975 (CVULP_1362) - 1354279..1354713 (+) 435 WP_099507254.1 hypothetical protein -
  CVULP_RS06980 (CVULP_1363) - 1354723..1356531 (+) 1809 WP_180753033.1 Na/Pi cotransporter family protein -
  CVULP_RS06985 (CVULP_1364) - 1356533..1356730 (-) 198 WP_099461136.1 EexN family lipoprotein -
  CVULP_RS06990 (CVULP_1365) - 1356727..1357344 (-) 618 WP_099461137.1 trimeric intracellular cation channel family protein -
  CVULP_RS06995 (CVULP_1366) CJE1441 1357344..1357979 (-) 636 WP_372712702.1 DNA/RNA non-specific endonuclease Regulator
  CVULP_RS07000 (CVULP_1367) nth 1357985..1358620 (-) 636 WP_099461139.1 endonuclease III -
  CVULP_RS07005 (CVULP_1368) - 1358697..1359518 (+) 822 WP_099461140.1 peptidylprolyl isomerase -
  CVULP_RS07010 (CVULP_1369) fbaA 1359518..1360582 (+) 1065 WP_099461141.1 class II fructose-bisphosphate aldolase -
  CVULP_RS07015 (CVULP_1370) - 1360655..1362019 (+) 1365 WP_099461142.1 MotA/TolQ/ExbB proton channel family protein -
  CVULP_RS07020 (CVULP_1371) - 1362009..1362950 (+) 942 WP_099461143.1 OmpA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 25063.90 Da        Isoelectric Point: 9.4960

>NTDB_id=372479 CVULP_RS06995 WP_372712702.1 1357344..1357979(-) (CJE1441) [Campylobacter vulpis strain 251/13]
MILLTIFSISLFAKYELDEEFKGYFNALNCSIVLNKIYYINCYDYHLKGSKALAYEVKAKNLALKQLKKRPRFEEDFSLA
KKYRTHWEDYKNSSYSRGHIAPNASFSYSLASQKAVFLMSNITPQNFQINNKIWNDIEKRERELARKFQKIDVLNLILYD
ENPKRIKNYIAVPSFYIKIFKAKDFKECYKVPNLDVIDENINTYQISCENF

Nucleotide


Download         Length: 636 bp        

>NTDB_id=372479 CVULP_RS06995 WP_372712702.1 1357344..1357979(-) (CJE1441) [Campylobacter vulpis strain 251/13]
ATCATCTTGCTTACTATTTTTAGCATAAGTCTTTTTGCGAAATATGAATTAGACGAAGAATTTAAGGGCTATTTTAATGC
CTTAAATTGTTCTATTGTGCTAAATAAAATTTACTATATTAATTGCTATGACTATCATCTAAAAGGCTCAAAGGCTCTAG
CTTATGAAGTTAAAGCGAAAAATTTAGCCTTAAAGCAACTTAAAAAAAGACCAAGATTTGAAGAGGATTTTTCTTTAGCG
AAAAAATATAGAACTCACTGGGAAGACTATAAAAATAGCTCTTATAGTAGAGGACATATCGCACCTAATGCGTCTTTTAG
CTATTCTTTGGCTTCACAAAAAGCCGTATTTTTAATGAGTAATATTACGCCACAAAATTTTCAAATTAACAATAAAATTT
GGAACGATATAGAAAAAAGAGAGAGGGAACTCGCGCGTAAATTTCAAAAAATAGATGTTTTAAATCTTATCCTATATGAT
GAAAATCCTAAACGCATTAAAAATTACATTGCCGTGCCTAGTTTTTATATTAAAATTTTTAAAGCAAAAGATTTTAAAGA
GTGCTATAAAGTGCCAAATCTTGATGTTATAGATGAAAATATCAATACTTATCAAATTTCTTGTGAGAATTTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

58

94.787

0.55
  CJE0566 Campylobacter jejuni RM1221

57.576

93.839

0.54

Multiple sequence alignment