Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   CVULP_RS00775 Genome accession   NZ_CP041617
Coordinates   148542..150149 (+) Length   535 a.a.
NCBI ID   WP_099506886.1    Uniprot ID   -
Organism   Campylobacter vulpis strain 251/13     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143542..155149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVULP_RS00755 (CVULP_0146) - 145693..145992 (+) 300 WP_099462478.1 transformation system protein -
  CVULP_RS00760 (CVULP_0147) ctsD 145970..147379 (+) 1410 WP_099462480.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CVULP_RS00765 (CVULP_0148) - 147372..147977 (+) 606 WP_099506887.1 ATP-binding protein -
  CVULP_RS00770 (CVULP_0149) - 147979..148545 (+) 567 WP_099506923.1 transformation system protein -
  CVULP_RS00775 (CVULP_0150) ctsE 148542..150149 (+) 1608 WP_099506886.1 GspE/PulE family protein Machinery gene
  CVULP_RS00780 (CVULP_0151) ctsF 150146..151327 (+) 1182 WP_099506885.1 type II secretion system F family protein Machinery gene
  CVULP_RS00785 (CVULP_0152) - 151354..153186 (-) 1833 WP_265415674.1 flagellin -
  CVULP_RS00790 (CVULP_0153) - 153298..153906 (-) 609 WP_099507284.1 hypothetical protein -
  CVULP_RS00795 (CVULP_0154) truD 153961..155082 (-) 1122 WP_099507285.1 tRNA pseudouridine(13) synthase TruD -

Sequence

Protein


Download         Length: 535 a.a.        Molecular weight: 61283.24 Da        Isoelectric Point: 5.7453

>NTDB_id=372466 CVULP_RS00775 WP_099506886.1 148542..150149(+) (ctsE) [Campylobacter vulpis strain 251/13]
MMEFLKNLGFEEELKEGFKDENLRHFLFELYLKNELDLNALFLNLGVKSEDFLKALAQYLHLEFVEFETIDENLCDSFAF
SLLWQNQILPLQKDDANLFILSAKPLNLELLNKIEHLFRSKFIKNALCDSYQLEQNLNKLYIKQKLKELSAKLKQELNAN
SKENEQSSVSLLFDFILQEALKLKASDVHIESLENGALIRFRVDGVLRVFCHLEEELYQALIFHIKLLAHLNVAESRKAQ
DGSFNKSFESVEFDFRISTLPLQKGESVVLRILRQDLELLSLENLHFSKQNLALITKNIQKPFGMILLTGPTGSGKSTTL
YACLKSLACVEKKIITAEDPIEYKMPQIQQIALNAKAGLDFSNALRAILRQDPDVIMIGEIRDEESLDIALKGAQTGHLI
LSTLHTNDALSTIERLLDMRAKPYLIASSLNLIIAQRLARKLCPYCKIQKFKNEEVFYEARGCEKCDFSGFLGRELLSEC
LELDEDLKELIRKNASKNELLTYAKKRGFLTMYELGLEKARLGIISIEELMRVVG

Nucleotide


Download         Length: 1608 bp        

>NTDB_id=372466 CVULP_RS00775 WP_099506886.1 148542..150149(+) (ctsE) [Campylobacter vulpis strain 251/13]
ATAATGGAATTTTTAAAAAATTTAGGCTTTGAGGAGGAGCTAAAAGAGGGCTTTAAAGATGAGAATTTAAGGCATTTTTT
GTTTGAGCTGTATTTAAAAAATGAGCTTGATTTAAACGCCCTTTTTTTAAATTTAGGCGTAAAAAGTGAGGATTTTTTGA
AGGCTTTAGCTCAGTATTTGCACTTGGAATTTGTGGAATTTGAAACAATTGATGAAAATTTATGTGATTCTTTTGCCTTT
TCTTTGCTATGGCAAAATCAAATTCTCCCCCTGCAAAAAGATGACGCAAATCTTTTCATACTTTCTGCTAAACCTCTAAA
TTTAGAGCTTTTAAATAAGATAGAGCATCTTTTTCGCTCTAAATTTATCAAAAATGCCCTGTGTGATAGCTATCAATTAG
AGCAAAACTTAAACAAACTTTATATTAAGCAAAAATTAAAAGAATTAAGTGCGAAGTTAAAACAAGAATTAAACGCAAAT
TCTAAAGAAAACGAGCAAAGTAGCGTAAGTTTGCTTTTTGATTTTATCCTACAAGAAGCACTCAAATTAAAGGCAAGTGA
TGTGCATATAGAAAGCCTAGAAAATGGGGCTTTAATCCGCTTTCGTGTGGATGGGGTGTTGCGTGTTTTTTGCCATTTAG
AAGAAGAGCTTTACCAAGCCTTAATTTTTCACATTAAACTTTTGGCACACTTAAATGTCGCTGAAAGCAGAAAAGCACAA
GATGGAAGTTTTAATAAGAGTTTTGAGAGTGTAGAATTTGACTTTCGTATCTCAACTTTGCCTTTGCAAAAGGGTGAAAG
CGTGGTGCTTAGGATATTAAGGCAGGATTTGGAGCTTTTAAGCCTTGAAAATTTGCATTTTTCTAAGCAAAATTTAGCCT
TAATTACAAAAAATATTCAAAAACCTTTCGGTATGATCTTGCTTACTGGACCCACAGGTAGTGGAAAAAGCACGACCCTA
TATGCTTGCTTAAAAAGTCTTGCTTGTGTGGAGAAAAAAATCATCACCGCAGAAGATCCCATAGAATATAAAATGCCTCA
AATTCAGCAAATCGCCCTTAATGCCAAGGCCGGGCTTGATTTTAGCAATGCTTTAAGGGCGATTTTAAGGCAGGATCCTG
ATGTCATTATGATAGGAGAAATCCGCGATGAAGAAAGCCTTGACATAGCCTTAAAAGGCGCACAAACGGGGCATTTAATC
CTTAGCACACTTCATACTAATGACGCCCTTTCTACCATAGAACGCTTACTTGATATGAGGGCAAAGCCCTATTTAATAGC
CTCTTCGCTTAATCTCATTATCGCTCAACGCCTTGCAAGAAAACTTTGTCCTTATTGTAAAATTCAAAAGTTCAAAAATG
AGGAGGTATTTTACGAAGCTAGGGGCTGTGAAAAATGTGATTTTAGCGGCTTTTTGGGGAGAGAATTGTTAAGCGAATGT
TTGGAGCTTGATGAGGACTTGAAAGAGCTTATACGCAAAAATGCTAGTAAAAACGAGCTTTTAACTTATGCTAAAAAACG
AGGATTTTTAACGATGTATGAACTAGGACTTGAAAAAGCAAGACTTGGAATCATCAGCATAGAGGAACTTATGAGGGTGG
TAGGGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(176-441)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(46-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

53.996

95.888

0.518

Multiple sequence alignment