Detailed information NTG0372465

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: CVULP_RS00760
• Genome accession: NZ_CP041617
• Coordinates: 145970..147379 (+)
• Length: 469 a.a.
• NCBI ID: WP_099462480.1
• Uniprot ID: -
• Organism: Campylobacter vulpis strain 251/13
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 140970..152379

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CVULP_RS00750 (CVULP_0145)	nifJ	142133..145696 (+)	3564	WP_099506888.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
CVULP_RS00755 (CVULP_0146)	-	145693..145992 (+)	300	WP_099462478.1	transformation system protein	-
CVULP_RS00760 (CVULP_0147)	ctsD	145970..147379 (+)	1410	WP_099462480.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
CVULP_RS00765 (CVULP_0148)	-	147372..147977 (+)	606	WP_099506887.1	ATP-binding protein	-
CVULP_RS00770 (CVULP_0149)	-	147979..148545 (+)	567	WP_099506923.1	transformation system protein	-
CVULP_RS00775 (CVULP_0150)	ctsE	148542..150149 (+)	1608	WP_099506886.1	GspE/PulE family protein	Machinery gene
CVULP_RS00780 (CVULP_0151)	ctsF	150146..151327 (+)	1182	WP_099506885.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 469 a.a.
• Molecular weight: 52775.39 Da
• Isoelectric Point: 5.5642

>NTDB_id=372465 CVULP_RS00760 WP_099462480.1 145970..147379(+) (ctsD) [Campylobacter vulpis strain 251/13]
MLRLLLIKLIFCLSSLYALDCQKRLFDIHIKESLSIEEALDELASYCTFSIIVKDEFAKNELSKMQKSLYISQMTLEELF
RLLLKENNLNYEFDGKILSIWGISTQIFKLSYITSIREGQSIIKASVDSKPRQNDISLDNESDENMIKSMEKFDFWQNIE
KEITTLLNAYGEVKTPIINANAGIIIVTGTTLQLKKVGEYINKLENRLKKQVIIDVSIIAVNLNENHSSGINWQNFNIDF
ASTTQNGQNSFIQLQNGQGFVKNLGLRANLNFNSVLNFLSQNGKTQVLSNPKLMALNNQQAIISVGDTINYQVKESSKGT
ENGTTVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQNSPRTIAPDTIQKKLSTVVSMENNQTL
ILGGLISHNQIKEASGVNFLSKIPLLGLLFSGEETNSNSTEIVFIITPSIVDKQTGNMSLKDMGFKHYE

Nucleotide

• Length: 1410 bp

>NTDB_id=372465 CVULP_RS00760 WP_099462480.1 145970..147379(+) (ctsD) [Campylobacter vulpis strain 251/13]
ATGCTAAGATTGCTATTGATTAAATTAATTTTTTGCTTAAGTTCTCTTTATGCTTTAGATTGTCAAAAAAGGCTTTTTGA
TATTCACATTAAAGAAAGTTTAAGCATAGAAGAGGCACTTGATGAGCTTGCAAGTTACTGCACTTTTAGCATAATTGTTA
AAGATGAATTTGCGAAAAATGAACTAAGTAAAATGCAAAAAAGCTTATATATAAGTCAAATGACCTTAGAGGAACTTTTT
AGACTTTTGCTAAAAGAAAATAATTTAAATTATGAATTTGATGGCAAAATTTTAAGCATTTGGGGGATTTCAACTCAAAT
TTTTAAGTTAAGTTACATCACTTCTATTCGTGAAGGGCAAAGCATTATCAAGGCTTCTGTGGATTCTAAACCTAGACAAA
ATGATATAAGCTTAGACAATGAAAGCGATGAAAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATAGAG
AAAGAAATCACCACCCTACTTAATGCCTATGGGGAAGTAAAAACGCCTATTATTAATGCAAATGCTGGTATTATCATCGT
TACAGGCACAACTTTACAGCTTAAAAAAGTGGGAGAGTATATTAATAAACTTGAAAATAGGCTTAAAAAGCAAGTGATTA
TCGATGTTAGCATTATTGCTGTAAATTTAAATGAAAACCATTCAAGTGGGATTAATTGGCAAAATTTCAATATTGATTTT
GCTAGCACGACTCAAAATGGGCAAAATTCTTTTATCCAACTTCAAAATGGGCAGGGTTTTGTGAAAAATTTGGGCTTAAG
AGCGAATCTTAATTTTAATTCCGTGTTAAATTTTCTTTCACAAAATGGCAAAACTCAAGTTCTCTCAAACCCTAAACTTA
TGGCTTTAAATAACCAACAAGCCATCATTTCAGTCGGTGATACCATTAATTATCAAGTCAAAGAAAGTTCCAAAGGCACG
GAAAATGGCACAACTGTGAGTGAGAGTTTTAGTAATTATTCTATTTTTGTGGGGATATTACTTAGCATTTTGCCTGAAAT
TTCTGATGATAATAAAATTATGCTTCGCATTAATCCTAGCCTTAGTGATTTTAAATATCCTCAAGATAATCAAAGACAAA
ATTCTCCTCGCACCATAGCACCTGATACCATACAAAAAAAGCTCTCCACAGTCGTTTCTATGGAAAATAATCAAACCTTG
ATTTTAGGCGGACTCATCTCGCATAATCAAATCAAAGAAGCAAGTGGGGTCAATTTTCTTTCTAAAATCCCTTTGCTTGG
GCTTTTATTTAGCGGAGAGGAGACAAACTCAAATAGCACAGAAATCGTTTTCATCATCACACCTAGCATAGTGGATAAAC
AAACGGGAAATATGAGCCTTAAGGATATGGGATTTAAGCACTATGAGTGA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (279-452)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	74.419	100	0.751