Detailed information NTG0372301

Bioinformatically predicted

Overview

• Name: crp
• Type: Regulator
• Locus tag: G5C67_RS09270
• Genome accession: NZ_CP049089
• Coordinates: 1885108..1885782 (+)
• Length: 224 a.a.
• NCBI ID: WP_021111230.1
• Uniprot ID: -
• Organism: Glaesserella parasuis strain vHPS7
• Function: promote expression of competence genes (predicted from homology) Competence regulation

Genomic Context

Location: 1880108..1890782

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G5C67_RS09235 (G5C67_09200)	rpmG	1881108..1881278 (-)	171	WP_005624479.1	50S ribosomal protein L33	-
G5C67_RS09240 (G5C67_09205)	rpmB	1881290..1881526 (-)	237	WP_006251446.1	50S ribosomal protein L28	-
G5C67_RS09245 (G5C67_09210)	radC	1881652..1882368 (-)	717	WP_021113221.1	RadC family protein	Machinery gene
G5C67_RS09250 (G5C67_09215)	coaBC	1882538..1883743 (+)	1206	WP_035523326.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
G5C67_RS09255 (G5C67_09220)	dut	1883740..1884195 (+)	456	WP_021119359.1	dUTP diphosphatase	-
G5C67_RS09260 (G5C67_09225)	slmA	1884204..1884809 (+)	606	WP_021114417.1	nucleoid occlusion factor SlmA	-
G5C67_RS09265 (G5C67_09230)	-	1884817..1885041 (+)	225	WP_005713165.1	YheU family protein	-
G5C67_RS09270 (G5C67_09235)	crp	1885108..1885782 (+)	675	WP_021111230.1	cAMP-activated global transcriptional regulator CRP	Regulator
G5C67_RS09275 (G5C67_09240)	-	1886036..1886287 (+)	252	WP_223300025.1	hypothetical protein	-
G5C67_RS09280 (G5C67_09245)	-	1886326..1886472 (+)	147	WP_021110348.1	hypothetical protein	-
G5C67_RS09285 (G5C67_09250)	pyrD	1886734..1887741 (-)	1008	WP_035523316.1	quinone-dependent dihydroorotate dehydrogenase	-
G5C67_RS09290 (G5C67_09255)	-	1887988..1888938 (-)	951	WP_005713153.1	ribose-phosphate pyrophosphokinase	-
G5C67_RS09295 (G5C67_09260)	ispE	1888966..1889811 (-)	846	WP_164692173.1	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	-
G5C67_RS09300 (G5C67_09265)	lolB	1889813..1890445 (-)	633	WP_112063094.1	lipoprotein insertase outer membrane protein LolB	-

Sequence

Protein

• Length: 224 a.a.
• Molecular weight: 25169.13 Da
• Isoelectric Point: 6.8374

>NTDB_id=372301 G5C67_RS09270 WP_021111230.1 1885108..1885782(+) (crp) [Glaesserella parasuis strain vHPS7]
MQDVSISTAQLEDVSPLPSIHDPAVEWFLTNCHIHRYPAKYTLIHAGEDAESLFYIVSGAVSVFIKDEEGKEMLLTNLGQ
GEFVGEISLFEEKAQPRTAWVRTKGNCEIAEISYKKFKQLVHLNPDILMYLSAQMARRLRMTSRQVSNLAFLDVTGRIAQ
TLMNLAKMPDAMTHPQGMQIKITRQEIGQMVGCSRETVGRILKMLEDEGLISAHGKTIVVYGTR

Nucleotide

• Length: 675 bp

>NTDB_id=372301 G5C67_RS09270 WP_021111230.1 1885108..1885782(+) (crp) [Glaesserella parasuis strain vHPS7]
ATGCAAGATGTTTCAATCTCAACCGCACAGCTTGAAGATGTCAGCCCATTACCATCCATTCACGATCCTGCGGTGGAATG
GTTTTTAACTAACTGTCATATTCATCGTTATCCAGCAAAATATACTTTAATTCACGCAGGTGAAGATGCTGAATCACTGT
TTTATATTGTCAGCGGAGCTGTGTCTGTCTTTATCAAGGATGAAGAAGGCAAGGAGATGTTATTAACCAATTTAGGCCAA
GGCGAATTTGTCGGTGAAATCAGCCTTTTTGAAGAAAAGGCTCAGCCTCGCACTGCTTGGGTAAGAACTAAAGGTAACTG
TGAAATTGCTGAAATTTCTTATAAAAAATTCAAGCAATTAGTGCATCTTAATCCAGATATTTTGATGTATTTATCCGCAC
AGATGGCTCGCCGTTTACGAATGACATCAAGACAGGTTAGTAACCTAGCATTTCTTGATGTAACAGGTCGTATTGCTCAA
ACATTGATGAATTTAGCTAAAATGCCTGATGCGATGACTCACCCTCAGGGTATGCAGATTAAAATTACTCGCCAAGAAAT
TGGTCAAATGGTTGGTTGCTCACGAGAAACTGTAGGCCGTATTTTGAAAATGCTTGAGGATGAAGGGTTAATTTCTGCAC
ATGGTAAAACTATCGTTGTGTATGGGACAAGATAA

Domains

Predicted by InterProScan.

• Crp-like helix-turn-helix domain (HTH_Crp_2) (156-220)

• Cyclic nucleotide-binding domain (cNMP_binding) (35-121)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
crp	Vibrio cholerae strain A1552	75.369	90.625	0.683
crp	Haemophilus influenzae Rd KW20	72.906	90.625	0.661
crp	Acinetobacter baumannii D1279779	48	89.286	0.429