Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ST64987_RS00350 Genome accession   NZ_CP049053
Coordinates   62080..62670 (+) Length   196 a.a.
NCBI ID   WP_011680603.1    Uniprot ID   Q03MX8
Organism   Streptococcus thermophilus strain ST64987     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 57080..67670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST64987_RS00325 (ST64987_0048) - 58210..58665 (-) 456 WP_011680598.1 DUF3021 domain-containing protein -
  ST64987_RS00330 (ST64987_0049) - 58662..59053 (-) 392 Protein_44 LytTR family DNA-binding domain-containing protein -
  ST64987_RS00335 (ST64987_0050) - 59277..59582 (+) 306 WP_014621013.1 hypothetical protein -
  ST64987_RS00340 (ST64987_0051) hexB 59634..61577 (+) 1944 WP_113870458.1 DNA mismatch repair endonuclease MutL Machinery gene
  ST64987_RS00345 (ST64987_0052) - 61707..61928 (+) 222 WP_011680602.1 hypothetical protein -
  ST64987_RS00350 (ST64987_0053) ruvA 62080..62670 (+) 591 WP_011680603.1 Holliday junction branch migration protein RuvA Machinery gene
  ST64987_RS00355 (ST64987_0054) - 62677..63231 (+) 555 WP_014621014.1 DNA-3-methyladenine glycosylase I -
  ST64987_RS00360 (ST64987_0055) cinA 63327..64598 (+) 1272 WP_014621015.1 competence/damage-inducible protein A Machinery gene
  ST64987_RS00365 (ST64987_0056) recA 64634..65773 (+) 1140 WP_011680606.1 recombinase RecA Machinery gene
  ST64987_RS00370 (ST64987_0057) spx 65950..66348 (+) 399 WP_002949058.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21683.98 Da        Isoelectric Point: 5.2834

>NTDB_id=371864 ST64987_RS00350 WP_011680603.1 62080..62670(+) (ruvA) [Streptococcus thermophilus strain ST64987]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKATELKKVKAFFEDTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=371864 ST64987_RS00350 WP_011680603.1 62080..62670(+) (ruvA) [Streptococcus thermophilus strain ST64987]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAAGCCACAGAGCTTAAGAAAGTGAAAGCCTTCTTTGAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q03MX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.5

100

0.679
  ruvA Streptococcus pneumoniae R6

66.5

100

0.679
  ruvA Streptococcus pneumoniae D39

66.5

100

0.679
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.647

100

0.444

Multiple sequence alignment