Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CXB71_RS01810 Genome accession   NZ_CP041361
Coordinates   359715..360152 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain WRN014     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 354715..365152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB71_RS20580 (CXB71_01770) - 355295..355459 (-) 165 Protein_304 molybdopterin dinucleotide binding domain-containing protein -
  CXB71_RS01775 (CXB71_01775) - 355573..356775 (+) 1203 WP_057080005.1 GTP-binding protein -
  CXB71_RS01780 (CXB71_01780) - 356840..357976 (+) 1137 WP_069013092.1 zinc-dependent alcohol dehydrogenase -
  CXB71_RS01785 (CXB71_01785) - 357991..358425 (+) 435 WP_057080003.1 RDD family protein -
  CXB71_RS01790 (CXB71_01790) - 358542..358817 (+) 276 WP_369719109.1 YckD family protein -
  CXB71_RS20880 - 358921..359037 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  CXB71_RS01800 (CXB71_01800) - 359036..359254 (+) 219 Protein_310 family 1 glycosylhydrolase -
  CXB71_RS01805 (CXB71_01805) nin/comJ 359295..359693 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  CXB71_RS01810 (CXB71_01810) nucA/comI 359715..360152 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CXB71_RS01815 (CXB71_01815) hxlB 360511..361068 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  CXB71_RS01820 (CXB71_01820) hxlA 361065..361700 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  CXB71_RS01825 (CXB71_01825) - 361932..362294 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=371552 CXB71_RS01810 WP_003156588.1 359715..360152(-) (nucA/comI) [Bacillus velezensis strain WRN014]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=371552 CXB71_RS01810 WP_003156588.1 359715..360152(-) (nucA/comI) [Bacillus velezensis strain WRN014]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment