Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   FLP15_RS08575 Genome accession   NZ_CP041356
Coordinates   1772373..1773644 (-) Length   423 a.a.
NCBI ID   WP_142766773.1    Uniprot ID   -
Organism   Lactococcus protaetiae strain KACC 19320     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1767373..1778644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLP15_RS08550 (FLP15_08550) - 1767819..1768697 (-) 879 WP_142766771.1 hypothetical protein -
  FLP15_RS08555 (FLP15_08555) - 1768922..1769908 (+) 987 WP_142767477.1 ATP-binding cassette domain-containing protein -
  FLP15_RS08560 (FLP15_08560) - 1769910..1770758 (+) 849 WP_223804595.1 ABC-2 family transporter protein -
  FLP15_RS08565 (FLP15_08565) - 1770783..1771568 (+) 786 WP_142766772.1 ABC-2 family transporter protein -
  FLP15_RS13165 comFC 1771730..1771822 (-) 93 WP_223804765.1 hypothetical protein Machinery gene
  FLP15_RS08570 (FLP15_08570) - 1771831..1772376 (-) 546 WP_223804596.1 ComF family protein -
  FLP15_RS08575 (FLP15_08575) comFA 1772373..1773644 (-) 1272 WP_142766773.1 DEAD/DEAH box helicase Machinery gene
  FLP15_RS12765 - 1773777..1775513 (+) 1737 WP_190288277.1 hypothetical protein -
  FLP15_RS08585 (FLP15_08585) - 1775872..1776507 (+) 636 WP_142766774.1 YigZ family protein -
  FLP15_RS08590 (FLP15_08590) - 1776534..1777025 (+) 492 WP_142766775.1 VanZ family protein -
  FLP15_RS08595 (FLP15_08595) - 1777103..1778128 (+) 1026 WP_142766776.1 DUF475 domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 48243.32 Da        Isoelectric Point: 10.1954

>NTDB_id=371499 FLP15_RS08575 WP_142766773.1 1772373..1773644(-) (comFA) [Lactococcus protaetiae strain KACC 19320]
MKDLYGRLLLTTDFNRIRHSVSKADFNQSPAMISVSTDSIKCLRCGSIHKKVMVRLPLGCFYCPTCINLGRVRSDESLYH
FPQQNFIAHSYLRWSGKLTSEQQKIADSLVTDCRQHSQILVRAVTGAGKTEMIYPIINQYLRDGKSVAVVSPRIDVCIEL
HQRLSRDFSCKIPLLHGEGQPYFRAPLVIATTHQLLRFRDAFDLLIVDEVDAFPFADNPMLYFAACTARKPDSCLIYLTA
TTTDFLDHQIKIGALHQLELTQRFHGGKLTVPKLLWHTKFIQCLKKQRISRFPLLIFVPEIKFGESFTKKLKQKFPEEKI
AFVSSKSKQRLNIVEDFRSGNYSILVTTSILERGVTFPEIDVFVLLAHHTNFTKSALIQMSGRVGRSITRPSGLVYFFHE
GRTKAMLKAVQEIKKSNRRGGVL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=371499 FLP15_RS08575 WP_142766773.1 1772373..1773644(-) (comFA) [Lactococcus protaetiae strain KACC 19320]
ATGAAAGATTTATACGGACGATTATTACTGACAACAGATTTTAATCGCATCAGACATTCTGTCAGCAAAGCTGATTTTAA
CCAATCTCCTGCTATGATTTCTGTCAGCACTGACAGCATCAAATGTTTGCGATGTGGCAGCATCCACAAAAAAGTTATGG
TTCGACTTCCTCTAGGATGTTTTTATTGCCCGACTTGTATTAATCTGGGAAGGGTGCGCTCTGATGAGTCACTCTATCAC
TTCCCTCAGCAAAATTTTATAGCACATTCTTATCTTCGTTGGTCAGGAAAACTAACCTCAGAACAGCAAAAAATCGCTGA
CAGCCTTGTCACAGATTGCCGTCAGCACTCACAGATTCTTGTCAGAGCTGTCACAGGTGCAGGAAAGACCGAGATGATTT
ACCCAATCATCAATCAATATTTGAGAGATGGAAAAAGTGTTGCAGTTGTCAGTCCTCGAATTGATGTCTGTATCGAGCTA
CATCAACGACTTTCTCGTGATTTTTCTTGTAAAATACCACTCTTGCATGGCGAAGGTCAGCCTTATTTTCGTGCCCCACT
TGTGATTGCGACTACGCATCAACTCTTACGATTTCGTGATGCCTTTGACTTATTGATTGTTGACGAAGTTGATGCCTTTC
CTTTTGCAGACAATCCAATGCTTTATTTTGCTGCTTGCACTGCCAGAAAACCTGATTCTTGTTTAATTTATCTGACTGCC
ACAACCACTGATTTTTTAGATCATCAAATCAAAATCGGAGCTCTCCATCAACTTGAGCTAACTCAACGTTTTCATGGAGG
CAAGCTTACTGTTCCAAAACTTTTATGGCATACAAAATTTATCCAATGTTTAAAAAAGCAGAGAATAAGCCGTTTCCCGC
TTCTTATTTTTGTCCCCGAAATTAAGTTTGGTGAATCTTTTACAAAAAAGTTAAAGCAAAAATTTCCAGAAGAAAAAATT
GCATTTGTATCCTCCAAAAGCAAGCAGCGCTTAAATATCGTTGAAGACTTTCGTTCAGGAAACTACTCCATCCTTGTCAC
CACAAGTATTTTAGAGCGTGGAGTCACTTTTCCAGAAATAGACGTCTTTGTTCTCCTCGCTCATCACACTAATTTTACAA
AATCAGCCCTTATCCAAATGTCAGGGCGAGTTGGGCGCTCAATCACGCGCCCTAGTGGATTAGTCTACTTTTTTCACGAA
GGACGAACTAAAGCCATGCTTAAAGCTGTTCAGGAAATAAAAAAATCAAATCGTAGAGGAGGAGTTTTATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(97-242)

Helicase conserved C-terminal domain (Helicase_C)

(281-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

60.87

92.435

0.563
  comFA/cflA Streptococcus pneumoniae Rx1

47.344

100

0.485
  comFA/cflA Streptococcus pneumoniae D39

47.344

100

0.485
  comFA/cflA Streptococcus pneumoniae R6

47.344

100

0.485
  comFA/cflA Streptococcus pneumoniae TIGR4

47.344

100

0.485
  comFA/cflA Streptococcus mitis SK321

47.674

100

0.485
  comFA/cflA Streptococcus mitis NCTC 12261

50.508

93.144

0.47

Multiple sequence alignment