Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | IHMA87_RS24920 | Genome accession | NZ_CP041354 |
| Coordinates | 5195545..5196417 (+) | Length | 290 a.a. |
| NCBI ID | WP_012077297.1 | Uniprot ID | A6VBR4 |
| Organism | Pseudomonas aeruginosa strain AZPAE15042 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5190545..5201417
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHMA87_RS24905 (IHMA87_04866) | - | 5191928..5192395 (-) | 468 | WP_034081326.1 | pilin | - |
| IHMA87_RS24910 (IHMA87_04867) | pilB | 5192618..5194321 (+) | 1704 | WP_033998207.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| IHMA87_RS24915 (IHMA87_04868) | pilC | 5194325..5195542 (+) | 1218 | WP_034081324.1 | type II secretion system F family protein | Machinery gene |
| IHMA87_RS24920 (IHMA87_04869) | pilD | 5195545..5196417 (+) | 873 | WP_012077297.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| IHMA87_RS24925 (IHMA87_04870) | coaE | 5196414..5197025 (+) | 612 | WP_003152767.1 | dephospho-CoA kinase | - |
| IHMA87_RS24930 (IHMA87_04871) | yacG | 5197022..5197222 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| IHMA87_RS24935 (IHMA87_04872) | - | 5197260..5197469 (-) | 210 | WP_033998211.1 | hypothetical protein | - |
| IHMA87_RS24940 (IHMA87_04873) | - | 5197575..5198264 (-) | 690 | WP_012077298.1 | energy-coupling factor ABC transporter permease | - |
| IHMA87_RS24945 (IHMA87_04874) | - | 5198261..5198731 (-) | 471 | WP_079381791.1 | FAD/FMN-containing dehydrogenase | - |
| IHMA87_RS24950 (IHMA87_04875) | - | 5198728..5199153 (-) | 426 | WP_003152776.1 | GNAT family N-acetyltransferase | - |
| IHMA87_RS24955 (IHMA87_04876) | - | 5199285..5199914 (+) | 630 | WP_033998217.1 | DUF1780 domain-containing protein | - |
| IHMA87_RS24960 (IHMA87_04877) | - | 5199911..5200351 (+) | 441 | WP_012077299.1 | MOSC domain-containing protein | - |
| IHMA87_RS24965 (IHMA87_04878) | - | 5200386..5200556 (+) | 171 | WP_003152781.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31717.72 Da Isoelectric Point: 7.3859
>NTDB_id=371460 IHMA87_RS24920 WP_012077297.1 5195545..5196417(+) (pilD) [Pseudomonas aeruginosa strain AZPAE15042]
MPLLDYLASHPLAFVLCAIVLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLQPEPDPAIYNLVLPNSSCPHCGHEIR
PWENIPVLSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AILGVIMLRLRNAASGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAIVLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLQPEPDPAIYNLVLPNSSCPHCGHEIR
PWENIPVLSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AILGVIMLRLRNAASGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=371460 IHMA87_RS24920 WP_012077297.1 5195545..5196417(+) (pilD) [Pseudomonas aeruginosa strain AZPAE15042]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCGTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCACCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAGGCGCTCGGGC
TGCAGCCGGAGCCTGATCCGGCGATCTACAACCTGGTCCTGCCGAACTCCTCGTGCCCGCATTGCGGCCACGAGATCCGT
CCCTGGGAAAACATCCCGGTGCTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAGCTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGACGCGCTGTTCGGCGCGGT
GTTCGGCTACCTCAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGGTCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCCATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGCAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATTTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCGTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCACCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAGGCGCTCGGGC
TGCAGCCGGAGCCTGATCCGGCGATCTACAACCTGGTCCTGCCGAACTCCTCGTGCCCGCATTGCGGCCACGAGATCCGT
CCCTGGGAAAACATCCCGGTGCTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAGCTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGACGCGCTGTTCGGCGCGGT
GTTCGGCTACCTCAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGGTCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCCATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGCAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATTTGCAATTCGCCGGATTCAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.357 |
97.586 |
0.521 |
| pilD | Acinetobacter baumannii D1279779 |
51.237 |
97.586 |
0.5 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
50.566 |
91.379 |
0.462 |