Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FLM21_RS06975 Genome accession   NZ_CP041335
Coordinates   1455974..1456774 (+) Length   266 a.a.
NCBI ID   WP_148714883.1    Uniprot ID   -
Organism   Chitinolyticbacter meiyuanensis strain SYBC-H1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1450974..1461774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLM21_RS06950 - 1451453..1451674 (+) 222 WP_148714879.1 hypothetical protein -
  FLM21_RS06955 - 1451671..1453047 (-) 1377 WP_148714880.1 C13 family peptidase -
  FLM21_RS06960 - 1453116..1454042 (-) 927 WP_187360121.1 ZIP family metal transporter -
  FLM21_RS06965 pgeF 1454190..1454936 (-) 747 WP_148714881.1 peptidoglycan editing factor PgeF -
  FLM21_RS06970 rluD 1454923..1455975 (-) 1053 WP_148714882.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FLM21_RS06975 comL 1455974..1456774 (+) 801 WP_148714883.1 outer membrane protein assembly factor BamD Machinery gene
  FLM21_RS20780 - 1457565..1457834 (+) 270 WP_187360122.1 FeoA family protein -
  FLM21_RS07010 feoB 1457831..1460092 (+) 2262 WP_148714884.1 Fe(2+) transporter permease subunit FeoB -
  FLM21_RS07015 - 1460095..1460322 (+) 228 WP_148714885.1 FeoC-like transcriptional regulator -
  FLM21_RS07020 - 1460359..1460841 (+) 483 WP_187360123.1 low molecular weight protein-tyrosine-phosphatase -
  FLM21_RS07025 - 1461090..1461656 (+) 567 WP_148717474.1 TMEM165/GDT1 family protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30353.28 Da        Isoelectric Point: 6.8764

>NTDB_id=371303 FLM21_RS06975 WP_148714883.1 1455974..1456774(+) (comL) [Chitinolyticbacter meiyuanensis strain SYBC-H1]
MNKILPRFLAASIAAALIVGCSSTPTEQDETRGWSAEKLYAQAKAEQADKNFEASNKLLEKLEARYPYGRYAQQAMLESA
YNHYKDQEPLLALSSIDRFIKQYPAHPSMDYALYLRGLVHFNESQGFLSWLAKQDMSERDPQAARDSFESFKQLVTRFPE
SRYAGDAEARMGYLIGALANYELHVAKYYYKRGAYLAAANRGKYVIETYTNTKQVEPALGMMVLAYDKLGLNDLRDDTKR
VLAQNYPNSTVLSADFLDDRAWWAPW

Nucleotide


Download         Length: 801 bp        

>NTDB_id=371303 FLM21_RS06975 WP_148714883.1 1455974..1456774(+) (comL) [Chitinolyticbacter meiyuanensis strain SYBC-H1]
ATGAACAAGATTCTACCGCGTTTCCTTGCTGCTTCGATTGCTGCCGCCCTGATCGTCGGCTGCTCCTCCACCCCCACCGA
GCAGGACGAGACGCGCGGCTGGTCGGCCGAAAAGCTCTATGCCCAAGCCAAGGCCGAGCAGGCCGACAAGAACTTCGAGG
CATCGAACAAGCTGCTGGAAAAGCTGGAGGCACGCTATCCCTACGGCCGCTATGCGCAGCAGGCAATGCTGGAGTCGGCG
TACAACCACTACAAGGATCAGGAGCCGCTGCTGGCGCTGTCGTCGATCGATCGCTTCATCAAGCAGTACCCGGCGCATCC
GTCGATGGACTATGCGCTCTACCTGCGTGGTTTGGTCCATTTCAACGAATCGCAGGGTTTCCTGTCGTGGTTGGCCAAGC
AGGACATGTCCGAGCGCGATCCGCAGGCGGCGCGTGATTCATTCGAAAGCTTCAAGCAACTGGTTACCCGTTTCCCCGAG
AGCCGCTATGCAGGCGATGCCGAGGCGCGGATGGGTTACCTGATCGGCGCGCTGGCCAACTACGAGCTGCATGTCGCCAA
GTATTACTACAAGCGCGGCGCCTACCTTGCTGCCGCCAATCGTGGCAAGTATGTGATCGAGACCTATACCAACACTAAAC
AGGTTGAGCCCGCACTCGGCATGATGGTGCTGGCCTACGACAAGCTGGGCCTCAATGACTTGCGCGACGACACCAAGCGG
GTGCTGGCCCAGAACTATCCGAACAGCACAGTGCTGTCGGCCGATTTCCTCGATGATCGTGCCTGGTGGGCACCCTGGTA
A

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(36-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

49.442

100

0.5
  comL Neisseria gonorrhoeae MS11

49.071

100

0.496

Multiple sequence alignment