Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FLM54_RS01600 Genome accession   NZ_CP041327
Coordinates   353004..353696 (+) Length   230 a.a.
NCBI ID   WP_178954746.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. Scap25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 348004..358696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLM54_RS01590 (FLM54_01590) uvrA 348633..351452 (-) 2820 WP_076918874.1 excinuclease ABC subunit UvrA -
  FLM54_RS01595 (FLM54_01595) - 351616..352983 (+) 1368 WP_178954744.1 MFS transporter -
  FLM54_RS01600 (FLM54_01600) ssb 353004..353696 (+) 693 WP_178954746.1 single-stranded DNA-binding protein Machinery gene
  FLM54_RS01605 (FLM54_01605) - 354036..355682 (+) 1647 WP_178954748.1 EAL domain-containing protein -
  FLM54_RS01610 (FLM54_01610) - 355687..356595 (-) 909 WP_178954750.1 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 24883.03 Da        Isoelectric Point: 4.9264

>NTDB_id=371193 FLM54_RS01600 WP_178954746.1 353004..353696(+) (ssb) [Pseudoalteromonas sp. Scap25]
MARGVNKVILVGNLGQDPEVRYMPNGNGVANITLATSDSYKDKNTGQMVDKTEWHRVVFFGKLAEIVGEYCRKGSQIYVE
GKLQTRKWTDQQGQEKYTTEIVVDGFTGQMQMLGARGGDQQSGGYQGNQGGQQSGGYQGGQQSGSYGQNNQGQNSQQGSY
APQQQSAPAQQPAPQQNNQYQPQQQGGFAPQQNNAPQQQGGFAPKPQNAPQGGASNPMEPTIDFDDDIPF

Nucleotide


Download         Length: 693 bp        

>NTDB_id=371193 FLM54_RS01600 WP_178954746.1 353004..353696(+) (ssb) [Pseudoalteromonas sp. Scap25]
ATGGCACGCGGTGTGAACAAAGTAATTTTGGTTGGTAATTTAGGGCAAGATCCTGAAGTTCGTTACATGCCTAATGGTAA
TGGCGTAGCAAATATTACCTTAGCAACTTCAGACAGCTATAAAGATAAAAACACTGGCCAAATGGTTGATAAAACTGAGT
GGCACCGTGTGGTATTTTTTGGCAAATTAGCTGAAATTGTAGGCGAATACTGCCGCAAGGGTTCACAAATTTACGTAGAA
GGTAAACTTCAAACTCGTAAATGGACTGACCAACAAGGCCAAGAAAAGTACACTACAGAAATTGTTGTTGATGGCTTTAC
TGGTCAAATGCAAATGTTAGGTGCACGTGGTGGCGACCAACAAAGTGGTGGCTATCAAGGTAACCAAGGTGGTCAACAAA
GTGGCGGTTATCAAGGCGGACAGCAAAGCGGTAGCTATGGTCAAAATAACCAAGGCCAAAATAGTCAGCAAGGCAGTTAT
GCTCCACAGCAACAATCTGCACCTGCCCAGCAGCCAGCGCCGCAACAAAACAACCAGTATCAACCACAGCAGCAAGGTGG
TTTTGCACCTCAGCAAAATAATGCACCACAACAGCAAGGCGGGTTTGCTCCTAAGCCGCAAAATGCACCGCAAGGTGGCG
CATCAAATCCAATGGAACCAACAATCGACTTTGATGACGATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.908

99.565

0.487
  ssb Glaesserella parasuis strain SC1401

51.111

78.261

0.4
  ssb Neisseria gonorrhoeae MS11

39.823

98.261

0.391

Multiple sequence alignment