Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   FI644_RS16190 Genome accession   NZ_CP041305
Coordinates   3242859..3243620 (+) Length   253 a.a.
NCBI ID   WP_053477175.1    Uniprot ID   -
Organism   Cytobacillus solani strain 5L6     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3237859..3248620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FI644_RS16170 - 3238277..3239938 (+) 1662 WP_142109051.1 GspE/PulE family protein -
  FI644_RS16175 pilT 3239950..3240990 (+) 1041 WP_053477178.1 type IV pilus twitching motility protein PilT Machinery gene
  FI644_RS16180 - 3240992..3242197 (+) 1206 WP_053477177.1 type II secretion system F family protein -
  FI644_RS16185 - 3242328..3242795 (+) 468 WP_053477176.1 type II secretion system protein -
  FI644_RS16190 comC 3242859..3243620 (+) 762 WP_053477175.1 A24 family peptidase Machinery gene
  FI644_RS16195 pilM 3243635..3244624 (+) 990 WP_053477174.1 type IV pilus biogenesis protein PilM -
  FI644_RS16200 - 3244627..3245277 (+) 651 WP_053477173.1 PilN domain-containing protein -
  FI644_RS16205 - 3245277..3246305 (+) 1029 WP_053477172.1 LysM peptidoglycan-binding domain-containing protein -
  FI644_RS16210 - 3246445..3247542 (+) 1098 WP_053477171.1 SPOR domain-containing protein -
  FI644_RS16215 - 3247836..3248408 (+) 573 WP_053477170.1 nucleoside triphosphate pyrophosphatase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 27768.91 Da        Isoelectric Point: 9.7993

>NTDB_id=371164 FI644_RS16190 WP_053477175.1 3242859..3243620(+) (comC) [Cytobacillus solani strain 5L6]
MNILLILILIYGLALGSFYNVVGLRVPVKKSIVKPRSSCPNCNHQLTVIELIPVLSYMIQRGKCRQCKARISPIYPMMEL
ITGLLFVSAPLVIGWTAELVVAWTLISLLIIIFVTDITYMLIPDKILAVFAGIFLIERLLIPLSPWWDSLLGAAIGFTLL
LVIAIISKGGMGGGDIKLFALIGFIIGTKAMLLTFFLATLYGALFGIVGLLLKKVKRGKPIPFGPFIAAGTLTAYYYYDA
IIEAYLQYLSSGF

Nucleotide


Download         Length: 762 bp        

>NTDB_id=371164 FI644_RS16190 WP_053477175.1 3242859..3243620(+) (comC) [Cytobacillus solani strain 5L6]
TTGAATATCTTATTAATATTAATCCTAATTTATGGTCTGGCACTCGGCTCCTTCTACAACGTAGTCGGCCTTCGAGTCCC
TGTCAAAAAATCAATCGTCAAACCACGCTCATCCTGTCCAAACTGCAATCATCAGTTAACAGTAATTGAGCTCATCCCTG
TGCTATCCTATATGATTCAAAGGGGAAAATGCCGCCAATGCAAGGCGCGCATTTCTCCTATTTATCCAATGATGGAACTG
ATAACAGGGCTACTATTTGTTTCAGCACCGCTCGTGATAGGCTGGACTGCAGAGCTAGTTGTGGCATGGACGCTCATTTC
ATTATTGATTATTATTTTTGTTACTGATATTACTTATATGTTGATCCCTGATAAAATTTTAGCAGTGTTTGCAGGGATTT
TTTTAATAGAGAGACTGCTGATTCCTCTCTCCCCGTGGTGGGATTCCCTTTTAGGTGCAGCAATTGGTTTTACCCTGCTG
CTTGTCATAGCCATCATTAGTAAAGGTGGCATGGGTGGAGGGGATATTAAACTATTTGCTCTTATTGGTTTTATTATCGG
TACAAAGGCGATGTTGCTAACTTTTTTTCTTGCTACTTTATATGGTGCCCTTTTTGGAATTGTAGGGTTATTATTGAAGA
AAGTAAAAAGAGGAAAGCCAATTCCTTTTGGCCCATTTATTGCTGCAGGTACTTTAACAGCTTATTACTATTACGATGCG
ATAATTGAAGCGTATCTGCAATATTTATCATCAGGATTTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(104-207)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(10-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

50

96.443

0.482
  pilD Acinetobacter nosocomialis M2

33.935

100

0.372
  pilD Acinetobacter baumannii D1279779

33.935

100

0.372

Multiple sequence alignment