Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   G4V55_RS12495 Genome accession   NZ_CP048893
Coordinates   2105188..2105820 (-) Length   210 a.a.
NCBI ID   WP_279380775.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH240     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2100188..2110820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V55_RS12305 - 2100291..2100674 (-) 384 Protein_2128 pilin -
  G4V55_RS10960 lpxC 2100819..2101742 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  G4V55_RS10965 - 2102236..2102618 (-) 383 Protein_2130 pilin -
  G4V55_RS12310 pilE 2102753..2103238 (-) 486 WP_125121586.1 pilin Machinery gene
  G4V55_RS10980 - 2103295..2103642 (-) 348 Protein_2132 pilin -
  G4V55_RS10985 - 2103695..2104088 (-) 394 Protein_2133 pilin -
  G4V55_RS10990 - 2104223..2104662 (-) 440 Protein_2134 pilin -
  G4V55_RS12495 pilE 2105188..2105820 (-) 633 WP_279380775.1 pilin Machinery gene
  G4V55_RS11000 pilE 2105828..2106145 (-) 318 WP_003697861.1 pilin Machinery gene
  G4V55_RS11005 - 2106475..2106666 (+) 192 WP_014580443.1 hypothetical protein -
  G4V55_RS11010 - 2106730..2107419 (-) 690 WP_003696506.1 M48 family metallopeptidase -
  G4V55_RS11015 - 2107416..2108159 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  G4V55_RS11020 gmhB 2108189..2108752 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  G4V55_RS11025 - 2108895..2110547 (+) 1653 WP_125121555.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22864.79 Da        Isoelectric Point: 9.5667

>NTDB_id=371108 G4V55_RS12495 WP_279380775.1 2105188..2105820(-) (pilE) [Neisseria gonorrhoeae strain SRRSH240]
MASSSSIIGKYVESVTVTNGVVTAKMKSDGVNKEIQGKKLSLWAKRQAGSVKWFCGQPVTRDKAVTDDAVKDVTGNDKIE
TKHLPSTCRDKSSAGCTKTPEYYLNHGIWPEDNDKAGVASSSSIKGKYVKEVKVENGVVTATMKSDGVNKEIKGKKLSLW
ARREDGSVKWFCGRPVTRTDKANDDVTDDATNAIETKHLPSTCRDTSMTN

Nucleotide


Download         Length: 633 bp        

>NTDB_id=371108 G4V55_RS12495 WP_279380775.1 2105188..2105820(-) (pilE) [Neisseria gonorrhoeae strain SRRSH240]
GTGGCATCTTCTTCATCAATCATAGGCAAATATGTTGAAAGCGTTACGGTCACAAACGGCGTCGTTACCGCCAAAATGAA
ATCAGACGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCGACAAAGCCGTCACCGACGACGCCGTCAAAGACGTCACCGGCAACGACAAAATCGAA
ACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATCTGCCGGTTGCACAAAAACACCCGAGTATTACCTGAATCACGG
CATATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCTTCTTCATCAATCAAAGGCAAATATGTTAAGGAAGTTAAAG
TCGAAAACGGCGTCGTTACCGCCACAATGAAATCAGACGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGG
GCCAGGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACGGCCGGTTACGCGCACCGACAAAGCCAACGACGACGTTAC
CGACGACGCCACCAACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATACGTCAATGACAAATTAG

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-89)

Pilin (bacterial filament) (Pilin)

(97-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

74.766

50.952

0.381
  pilE Neisseria gonorrhoeae MS11

73.148

51.429

0.376

Multiple sequence alignment