Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/comEC   Type   Machinery gene
Locus tag   FK537_RS03205 Genome accession   NZ_CP041291
Coordinates   593483..595885 (-) Length   800 a.a.
NCBI ID   WP_168370207.1    Uniprot ID   -
Organism   Acinetobacter indicus strain 94-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 588483..600885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK537_RS03180 (FK537_03220) purM 588806..589876 (+) 1071 WP_005176576.1 phosphoribosylformylglycinamidine cyclo-ligase -
  FK537_RS03185 (FK537_03225) purN 589883..590512 (+) 630 WP_104500385.1 phosphoribosylglycinamide formyltransferase -
  FK537_RS03190 (FK537_03230) - 590589..591392 (-) 804 WP_160241494.1 alpha/beta fold hydrolase -
  FK537_RS03195 (FK537_03235) sppA 591389..592414 (-) 1026 WP_016660002.1 signal peptide peptidase SppA -
  FK537_RS03200 (FK537_03240) - 592545..593486 (+) 942 WP_160243428.1 lysophospholipid acyltransferase family protein -
  FK537_RS03205 (FK537_03245) comA/comEC 593483..595885 (-) 2403 WP_168370207.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FK537_RS03210 (FK537_03250) lolD 595971..596654 (-) 684 WP_005176563.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  FK537_RS03215 (FK537_03255) - 596647..597882 (-) 1236 WP_005176562.1 lipoprotein-releasing ABC transporter permease subunit -
  FK537_RS03220 (FK537_03260) - 597908..598474 (+) 567 WP_005176561.1 PilZ domain-containing protein -
  FK537_RS03225 (FK537_03265) - 598462..599385 (-) 924 WP_005176560.1 DMT family transporter -
  FK537_RS03230 (FK537_03270) - 599391..599858 (-) 468 WP_005176559.1 YaiI/YqxD family protein -

Sequence


Protein


Download         Length: 800 a.a.        Molecular weight: 91540.66 Da        Isoelectric Point: 7.8221

>NTDB_id=370986 FK537_RS03205 WP_168370207.1 593483..595885(-) (comA/comEC) [Acinetobacter indicus strain 94-2]
MFKIMGAGWIVGIACMGKTLWPMLDFPLWLSGLLLIILLLQQIAALHWSHLGIQLINTCVAFVITFLLGLNFAQNQLQER
LIFRELTRRPAEVVVYVQQINQLGSSQLRQPVQVLNRHSQPVQWLALLPAEQELQLGRYYRLQGQTLPAHSFAVPGAFDV
EQWYLQQNIMSGFQVQSIVELTESELYRLGFGAHLRQHQQLWPQFKLWIETQRLQIRDFIQQQALQHPGLILALLTGDKS
LLDEATEQQFQRFGMSHLLAISGPHVLIFAAMLCFVLQRLVTRYWPELYAQLPRSYLLLLPFMGCVFVYCAYVGFEIPAL
RTLLICLVAGACLLLKQPIQPLSLLIGSASLLLLLDPLSVLSAAFWLSYGACFVLLRIYQTLRQQPVHPQQTLMQKLWQG
FRLLFESQWKIFIALFPLMIIFFKQIAWIAPLSNLLAIPWIGLVTVPLDILAGLSFYLAEPLSQLLFQLNDLALSLLLGC
LQLLDLLFVPQLIPVALSPPMLLSLVLGLMILFLPAGLVPKAWSALCLLPLLFQDQFSRQVELSVLDVGQGQAIFLRYRE
HSMMIDMGGHYDEQKWSIGRQIIQPFLSVKGVQQLDYLWLTHLDQDHSGAYQTLKPQLQVQQVYANAQLEVHPDSRFDYC
RQGQQWQWQPGIQIQVLSPKPEQLNPVEQQKNESSCVLLVEFAQAQPYSRFLLMGDAGWPTEYQLLQDYPDLKVDVLVLG
HHGSRHSSSYQFLKQLEPKLAIASAGLNNRYGHPSTQVKARLNALKIPLWQTAQQGSIQFYPTENEVLPYRHMRVWLRRD

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=370986 FK537_RS03205 WP_168370207.1 593483..595885(-) (comA/comEC) [Acinetobacter indicus strain 94-2]
ATGTTCAAAATCATGGGTGCCGGCTGGATTGTAGGTATTGCCTGTATGGGCAAAACGCTATGGCCGATGCTGGATTTCCC
GCTCTGGTTGTCAGGCCTGTTACTGATTATCCTGCTTTTACAGCAAATAGCTGCTTTACATTGGTCCCATCTGGGCATCC
AATTGATTAATACCTGTGTGGCATTTGTCATTACATTTTTGTTGGGGCTGAATTTTGCCCAAAACCAGTTGCAAGAGCGG
TTGATATTTCGTGAACTGACCCGCCGGCCGGCAGAGGTGGTGGTCTATGTCCAGCAAATCAATCAGCTGGGTAGCAGCCA
GCTCCGGCAACCGGTTCAGGTGCTGAACCGGCATAGCCAGCCGGTGCAATGGCTGGCCTTGCTGCCGGCTGAACAGGAAC
TACAGCTGGGGCGTTATTATCGTTTACAGGGGCAGACCTTGCCGGCGCACAGTTTTGCCGTTCCGGGTGCGTTTGATGTA
GAGCAGTGGTATCTCCAGCAAAATATCATGAGCGGCTTTCAGGTCCAGTCGATTGTGGAACTGACTGAATCGGAACTGTA
TCGGCTGGGATTTGGGGCACATTTAAGACAGCATCAGCAACTCTGGCCGCAATTTAAATTGTGGATCGAAACACAGCGTT
TACAGATTCGTGACTTTATCCAGCAGCAGGCATTGCAGCATCCCGGCTTAATACTGGCACTGCTGACTGGCGATAAAAGT
TTACTCGATGAAGCCACCGAGCAGCAGTTTCAGCGTTTCGGGATGAGTCATTTGCTGGCGATTTCCGGGCCGCATGTGCT
GATTTTTGCCGCCATGCTGTGTTTTGTGCTGCAGCGCCTGGTCACTCGCTATTGGCCCGAATTATATGCGCAATTGCCCC
GAAGTTATCTGCTGTTGCTGCCGTTTATGGGCTGTGTATTTGTATATTGTGCCTATGTTGGGTTTGAAATTCCTGCGCTC
AGGACTTTACTGATTTGTCTGGTGGCAGGCGCCTGCCTGTTGCTAAAGCAGCCGATACAGCCGCTGTCTTTGCTGATTGG
TAGTGCTTCGTTATTGCTGCTGCTTGATCCGTTGAGTGTGCTGTCGGCGGCATTCTGGCTGTCTTATGGCGCCTGCTTTG
TGCTGTTAAGGATTTACCAGACCCTCCGGCAACAACCGGTGCATCCGCAGCAGACGTTGATGCAGAAATTGTGGCAGGGC
TTCCGGCTGTTATTTGAATCGCAATGGAAAATTTTTATTGCGCTGTTTCCGCTGATGATCATCTTCTTCAAGCAGATTGC
CTGGATTGCGCCGCTGAGTAATCTATTGGCCATTCCCTGGATCGGTCTGGTGACTGTACCGCTGGATATTCTGGCCGGTT
TAAGTTTTTATCTGGCGGAACCGCTGAGCCAGTTGCTGTTTCAGCTCAATGACTTGGCGCTAAGTCTGTTATTGGGTTGT
TTGCAGTTGCTGGATTTGCTGTTTGTGCCGCAACTGATTCCGGTTGCGCTGAGCCCACCGATGCTGCTGAGTCTGGTGCT
GGGACTGATGATTTTATTTCTTCCCGCAGGTCTAGTGCCTAAAGCCTGGTCAGCGCTGTGCTTGTTGCCTTTGCTGTTTC
AGGATCAGTTTTCTCGGCAGGTGGAACTTAGTGTGCTGGATGTTGGGCAAGGGCAGGCGATCTTTTTACGCTATCGTGAA
CACAGTATGATGATTGATATGGGCGGTCATTATGATGAACAGAAATGGAGTATCGGCCGGCAGATTATCCAGCCCTTTTT
AAGTGTCAAAGGCGTGCAGCAGTTAGATTATTTATGGTTGACCCATCTGGATCAGGATCATAGCGGTGCCTATCAGACCT
TAAAGCCACAGTTGCAGGTGCAACAGGTCTATGCCAATGCTCAGCTTGAGGTACATCCGGACAGTCGCTTTGACTATTGC
CGGCAGGGACAGCAATGGCAGTGGCAACCGGGCATTCAGATTCAGGTACTCTCTCCGAAACCGGAGCAGTTAAATCCTGT
AGAACAGCAGAAAAATGAAAGTTCCTGTGTGCTGCTGGTTGAGTTTGCACAGGCTCAGCCTTATTCACGCTTTTTATTGA
TGGGCGATGCAGGCTGGCCGACTGAATATCAGTTATTACAGGATTATCCGGATTTAAAAGTGGATGTGCTGGTGCTTGGC
CATCATGGTAGCCGGCACAGTTCATCTTACCAGTTTTTAAAACAGCTGGAGCCTAAACTGGCAATTGCATCGGCGGGGCT
GAATAACCGTTATGGCCATCCGAGCACGCAGGTAAAAGCCCGACTGAACGCCTTAAAAATTCCATTATGGCAGACCGCGC
AGCAGGGTAGCATCCAGTTTTATCCCACTGAGAATGAGGTGCTACCGTATCGGCATATGCGGGTTTGGCTGCGGCGTGAT
TAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

48.039

100

0.49

  comA/comEC Acinetobacter baylyi ADP1

48.089

100

0.488

  comA/comEC Acinetobacter baumannii strain A118

47.549

100

0.485


Multiple sequence alignment