Detailed information NTG0370717

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FKZ69_RS04445
• Genome accession: NZ_CP041236
• Coordinates: 951371..952237 (-)
• Length: 288 a.a.
• NCBI ID: WP_141605476.1
• Uniprot ID: -
• Organism: Pseudomonas azotoformans strain P45A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 946371..957237

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FKZ69_RS04405 (FKZ69_04405)	-	946792..948090 (-)	1299	WP_065924079.1	NAD(P)/FAD-dependent oxidoreductase	-
FKZ69_RS04410 (FKZ69_04410)	-	948151..948324 (-)	174	WP_016976295.1	DUF3094 family protein	-
FKZ69_RS04415 (FKZ69_04415)	-	948378..949007 (-)	630	WP_027604891.1	DUF1780 domain-containing protein	-
FKZ69_RS04420 (FKZ69_04420)	-	949113..949580 (+)	468	WP_092489006.1	FAD/FMN-containing dehydrogenase	-
FKZ69_RS04425 (FKZ69_04425)	-	949577..950266 (+)	690	WP_141605475.1	energy-coupling factor ABC transporter permease	-
FKZ69_RS04430 (FKZ69_04430)	-	950342..950557 (+)	216	WP_003171680.1	hypothetical protein	-
FKZ69_RS04435 (FKZ69_04435)	yacG	950554..950754 (-)	201	WP_027604888.1	DNA gyrase inhibitor YacG	-
FKZ69_RS04440 (FKZ69_04440)	coaE	950751..951374 (-)	624	WP_092489004.1	dephospho-CoA kinase	-
FKZ69_RS04445 (FKZ69_04445)	pilD	951371..952237 (-)	867	WP_141605476.1	prepilin peptidase	Machinery gene
FKZ69_RS04450 (FKZ69_04450)	pilC	952234..953442 (-)	1209	WP_141605477.1	type II secretion system F family protein	Machinery gene
FKZ69_RS04455 (FKZ69_04455)	-	953645..954055 (+)	411	WP_092489084.1	pilin	-
FKZ69_RS04460 (FKZ69_04460)	-	954091..955491 (+)	1401	WP_141605478.1	O-antigen ligase family protein	-
FKZ69_RS32890 (FKZ69_04470)	-	956407..956748 (+)	342	WP_186296024.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31806.90 Da
• Isoelectric Point: 7.4318

>NTDB_id=370717 FKZ69_RS04445 WP_141605476.1 951371..952237(-) (pilD) [Pseudomonas azotoformans strain P45A]
MSLLLNEHPLAFVTIALVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPAEPGGPTYNLMHPNSCCPHCDHPIRPW
ENIPLLSYLMLRGRCAHCQGAISPRYPFTELACGLISAWVAWHFGFGWQAAAVLVLSWGLLAMSLIDADHQLLPDVLVLP
LLWLGLIVNSSGLLTTLPDALWGTVIGYMSLWSVFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVF
VGLILMRLRKTLASTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=370717 FKZ69_RS04445 WP_141605476.1 951371..952237(-) (pilD) [Pseudomonas azotoformans strain P45A]
TTGAGCCTGCTGCTGAACGAGCACCCATTGGCCTTTGTCACCATCGCGCTGGTACTGGGGCTGATCGTCGGCAGTTTCCT
CAACGTGCTGGTCTGGCGCCTGCCAAAAATGCTCGAACGGGAATGGCGTGCCCAGGCCCATGAAGTGCTCGGCTTGCCTG
CCGAACCTGGCGGGCCGACCTACAACCTGATGCACCCCAACTCATGCTGCCCACACTGTGATCATCCAATCCGGCCGTGG
GAAAATATCCCACTGCTCAGCTACCTGATGCTCAGGGGGCGCTGCGCCCATTGCCAGGGAGCCATCAGCCCCCGCTACCC
TTTCACGGAACTCGCCTGTGGGTTGATCTCGGCCTGGGTCGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGCAGCGGTGC
TGGTGTTGAGTTGGGGGTTGCTGGCAATGAGCCTGATCGACGCGGACCACCAGTTGCTGCCTGATGTGCTGGTGCTGCCA
TTGCTGTGGCTGGGGCTGATCGTCAACAGCTCCGGATTACTGACGACATTGCCCGACGCACTATGGGGCACCGTGATCGG
CTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAAGACGGCATGGGCCACGGTGATTTCAAGT
TACTGGCCTTGCTCGGCGCCTGGGGCGGCTGGCAGATATTGCCGATGACACTGTTGATGTCGTCGCTGGTGGGGGTGTTT
GTCGGGTTGATCCTGATGCGCCTGCGCAAGACCCTGGCGTCCACGCCGATGCCGTTTGGTCCGTATCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.982	98.958	0.524
pilD	Vibrio campbellii strain DS40M4	49.296	98.611	0.486
pilD	Neisseria gonorrhoeae MS11	50.37	93.75	0.472
pilD	Acinetobacter baumannii D1279779	49.084	94.792	0.465
pilD	Acinetobacter nosocomialis M2	49.084	94.792	0.465