Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BMD_RS24880 Genome accession   NC_014103
Coordinates   4939297..4939659 (-) Length   120 a.a.
NCBI ID   WP_013085450.1    Uniprot ID   D5DNJ3
Organism   Priestia megaterium DSM 319     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4934297..4944659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMD_RS24870 (BMD_5119) - 4934786..4937416 (+) 2631 WP_013085448.1 DEAD/DEAH box helicase -
  BMD_RS24875 (BMD_5120) - 4937714..4938760 (+) 1047 WP_013085449.1 LysM peptidoglycan-binding domain-containing protein -
  BMD_RS24880 (BMD_5121) ssbB 4939297..4939659 (-) 363 WP_013085450.1 single-stranded DNA-binding protein Machinery gene
  BMD_RS24885 (BMD_5122) - 4939756..4940193 (+) 438 WP_013085451.1 YwpF-like family protein -
  BMD_RS27600 - 4940717..4940845 (+) 129 Protein_5013 helix-turn-helix domain-containing protein -
  BMD_RS24895 (BMD_5123) fabZ 4941169..4941603 (-) 435 WP_013085452.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BMD_RS24900 (BMD_5124) - 4941687..4942508 (-) 822 WP_013085453.1 flagellar hook-basal body protein -
  BMD_RS24905 (BMD_5125) - 4942532..4943356 (-) 825 WP_013085454.1 flagellar hook-basal body protein -
  BMD_RS24910 (BMD_5126) - 4943471..4944472 (-) 1002 WP_013085455.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13442.17 Da        Isoelectric Point: 7.1647

>NTDB_id=37063 BMD_RS24880 WP_013085450.1 4939297..4939659(-) (ssbB) [Priestia megaterium DSM 319]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLGGKPSGFSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=37063 BMD_RS24880 WP_013085450.1 4939297..4939659(-) (ssbB) [Priestia megaterium DSM 319]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTAGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTAGTAGGGCGTGTACAAACGCGA
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAGGTGGAAAGCC
ATCCGGTTTTTCTTCCTTTGATTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5DNJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508
  ssb Latilactobacillus sakei subsp. sakei 23K

54.369

85.833

0.467

Multiple sequence alignment