Detailed information NTG0370462

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FKM99_RS23030
• Genome accession: NZ_CP041202
• Coordinates: 2846404..2847273 (+)
• Length: 289 a.a.
• NCBI ID: WP_141180408.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain Vb0624
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2841404..2852273

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FKM99_RS23010 (FKM99_23010)	nadC	2841823..2842710 (+)	888	WP_141180406.1	carboxylating nicotinate-nucleotide diphosphorylase	-
FKM99_RS23015 (FKM99_23015)	-	2842973..2843407 (+)	435	WP_025501252.1	type IV pilin protein	-
FKM99_RS23020 (FKM99_23020)	pilB	2843407..2845092 (+)	1686	WP_141180407.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FKM99_RS23025 (FKM99_23025)	pilC	2845116..2846339 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
FKM99_RS23030 (FKM99_23030)	pilD	2846404..2847273 (+)	870	WP_141180408.1	A24 family peptidase	Machinery gene
FKM99_RS23035 (FKM99_23035)	coaE	2847274..2847888 (+)	615	WP_141180409.1	dephospho-CoA kinase	-
FKM99_RS23040 (FKM99_23040)	zapD	2847916..2848656 (+)	741	WP_023624252.1	cell division protein ZapD	-
FKM99_RS23045 (FKM99_23045)	yacG	2848725..2848919 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
FKM99_RS23050 (FKM99_23050)	rplS	2849249..2849602 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
FKM99_RS23055 (FKM99_23055)	trmD	2849644..2850387 (-)	744	WP_141180410.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FKM99_RS23060 (FKM99_23060)	rimM	2850415..2850963 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
FKM99_RS23065 (FKM99_23065)	rpsP	2850992..2851240 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32431.52 Da
• Isoelectric Point: 6.8205

>NTDB_id=370462 FKM99_RS23030 WP_141180408.1 2846404..2847273(+) (pilD) [Vibrio parahaemolyticus strain Vb0624]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIQPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWLVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=370462 FKM99_RS23030 WP_141180408.1 2846404..2847273(+) (pilD) [Vibrio parahaemolyticus strain Vb0624]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTCAGCCACCTCAAGAGGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGAATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTTAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTAGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.464	95.502	0.453