Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   G3T46_RS03290 Genome accession   NZ_CP048763
Coordinates   617039..617812 (+) Length   257 a.a.
NCBI ID   WP_002866495.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZH006     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 612039..622812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T46_RS03275 (G3T46_03270) - 612888..614822 (-) 1935 WP_167843424.1 ribonuclease R family protein -
  G3T46_RS03280 (G3T46_03275) ilvC 614941..615963 (+) 1023 WP_167843425.1 ketol-acid reductoisomerase -
  G3T46_RS03285 (G3T46_03280) - 615967..617049 (+) 1083 WP_167843426.1 divergent polysaccharide deacetylase family protein -
  G3T46_RS03290 (G3T46_03285) dprA 617039..617812 (+) 774 WP_002866495.1 DNA-processing protein DprA Machinery gene
  G3T46_RS03295 (G3T46_03290) dprB 617809..618192 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  G3T46_RS03300 (G3T46_03295) - 618221..619060 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  G3T46_RS03305 (G3T46_03300) msrA 619236..619733 (-) 498 WP_143298666.1 peptide-methionine (S)-S-oxide reductase MsrA -
  G3T46_RS03310 (G3T46_03305) ppa 619775..620293 (-) 519 WP_002871349.1 inorganic diphosphatase -
  G3T46_RS03315 (G3T46_03310) adk 620303..620881 (-) 579 WP_052794065.1 adenylate kinase -
  G3T46_RS03320 (G3T46_03315) aspS 620878..622629 (-) 1752 WP_167843427.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28742.58 Da        Isoelectric Point: 7.6510

>NTDB_id=370446 G3T46_RS03290 WP_002866495.1 617039..617812(+) (dprA) [Campylobacter jejuni strain ZH006]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=370446 G3T46_RS03290 WP_002866495.1 617039..617812(+) (dprA) [Campylobacter jejuni strain ZH006]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATTGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGTACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTCAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.222

100

0.992
  dprA Helicobacter pylori 26695

49.167

93.385

0.459