Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   G3T46_RS03295 Genome accession   NZ_CP048763
Coordinates   617809..618192 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain ZH006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 612809..623192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T46_RS03275 (G3T46_03270) - 612888..614822 (-) 1935 WP_167843424.1 ribonuclease R family protein -
  G3T46_RS03280 (G3T46_03275) ilvC 614941..615963 (+) 1023 WP_167843425.1 ketol-acid reductoisomerase -
  G3T46_RS03285 (G3T46_03280) - 615967..617049 (+) 1083 WP_167843426.1 divergent polysaccharide deacetylase family protein -
  G3T46_RS03290 (G3T46_03285) dprA 617039..617812 (+) 774 WP_002866495.1 DNA-processing protein DprA Machinery gene
  G3T46_RS03295 (G3T46_03290) dprB 617809..618192 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  G3T46_RS03300 (G3T46_03295) - 618221..619060 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  G3T46_RS03305 (G3T46_03300) msrA 619236..619733 (-) 498 WP_143298666.1 peptide-methionine (S)-S-oxide reductase MsrA -
  G3T46_RS03310 (G3T46_03305) ppa 619775..620293 (-) 519 WP_002871349.1 inorganic diphosphatase -
  G3T46_RS03315 (G3T46_03310) adk 620303..620881 (-) 579 WP_052794065.1 adenylate kinase -
  G3T46_RS03320 (G3T46_03315) aspS 620878..622629 (-) 1752 WP_167843427.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=370447 G3T46_RS03295 WP_002852281.1 617809..618192(+) (dprB) [Campylobacter jejuni strain ZH006]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=370447 G3T46_RS03295 WP_002852281.1 617809..618192(+) (dprB) [Campylobacter jejuni strain ZH006]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATTAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTTGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGTGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment