Detailed information NTG0037031

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: SAA6008_RS08505
• Genome accession: NC_017341
• Coordinates: 1724635..1725237 (-)
• Length: 200 a.a.
• NCBI ID: WP_000271554.1
• Uniprot ID: -
• Organism: Staphylococcus aureus subsp. aureus str. JKD6008
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1719635..1730237

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SAA6008_RS08485 (SAA6008_01607)	yajC	1721131..1721391 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
SAA6008_RS08490 (SAA6008_01608)	tgt	1721410..1722549 (-)	1140	WP_001112046.1	tRNA guanosine(34) transglycosylase Tgt	-
SAA6008_RS08495 (SAA6008_01609)	queA	1722572..1723597 (-)	1026	WP_001019172.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
SAA6008_RS08500 (SAA6008_01610)	ruvB	1723599..1724603 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SAA6008_RS08505 (SAA6008_01611)	ruvA	1724635..1725237 (-)	603	WP_000271554.1	Holliday junction branch migration protein RuvA	Machinery gene
SAA6008_RS08510 (SAA6008_01612)	-	1725251..1725706 (-)	456	WP_000368902.1	ACT domain-containing protein	-
SAA6008_RS08515 (SAA6008_01613)	obgE	1725719..1727011 (-)	1293	WP_000496100.1	GTPase ObgE	-
SAA6008_RS08520 (SAA6008_01614)	rpmA	1727366..1727650 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
SAA6008_RS08525 (SAA6008_01615)	-	1727662..1727982 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
SAA6008_RS08530 (SAA6008_01616)	rplU	1727988..1728296 (-)	309	WP_000457385.1	50S ribosomal protein L21	-
SAA6008_RS08535 (SAA6008_01617)	mreD	1728463..1728993 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
SAA6008_RS08540 (SAA6008_01618)	mreC	1728993..1729835 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
SAA6008_RS08545	-	1730035..1730154 (-)	120	WP_000840602.1	hypothetical protein	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22193.35 Da
• Isoelectric Point: 5.6622

>NTDB_id=37031 SAA6008_RS08505 WP_000271554.1 1724635..1725237(-) (ruvA) [Staphylococcus aureus subsp. aureus str. JKD6008]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYSFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=37031 SAA6008_RS08505 WP_000271554.1 1724635..1725237(-) (ruvA) [Staphylococcus aureus subsp. aureus str. JKD6008]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATAGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA N terminal domain (RuvA_N) (1-61)

• RuvA, C-terminal domain (RuvA_C) (156-197)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425