Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GCO85_RS10415 Genome accession   NZ_CP048618
Coordinates   2309587..2311659 (+) Length   690 a.a.
NCBI ID   WP_061637190.1    Uniprot ID   -
Organism   Legionella pneumophila strain ERS1305867     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2304587..2316659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCO85_RS10395 (GCO85_10405) folB 2305436..2305774 (+) 339 WP_042755221.1 dihydroneopterin aldolase -
  GCO85_RS10400 (GCO85_10410) - 2305814..2306509 (-) 696 WP_011214276.1 SPOR domain-containing protein -
  GCO85_RS10405 (GCO85_10415) argS 2306509..2308278 (-) 1770 WP_072368793.1 arginine--tRNA ligase -
  GCO85_RS10410 (GCO85_10420) - 2308382..2309440 (-) 1059 WP_011214278.1 AI-2E family transporter -
  GCO85_RS10415 (GCO85_10425) recG 2309587..2311659 (+) 2073 WP_061637190.1 ATP-dependent DNA helicase RecG Machinery gene
  GCO85_RS10420 (GCO85_10430) - 2312182..2313255 (-) 1074 WP_061637189.1 hypothetical protein -
  GCO85_RS10425 (GCO85_10435) - 2313604..2314746 (+) 1143 WP_011214281.1 cation diffusion facilitator family transporter -
  GCO85_RS10430 (GCO85_10440) - 2314862..2315620 (+) 759 WP_014842075.1 ZIP family metal transporter -
  GCO85_RS10435 (GCO85_10445) - 2315613..2316215 (+) 603 WP_011214283.1 nucleoside triphosphate pyrophosphatase -

Sequence

Protein


Download         Length: 690 a.a.        Molecular weight: 77980.22 Da        Isoelectric Point: 8.0458

>NTDB_id=370110 GCO85_RS10415 WP_061637190.1 2309587..2311659(+) (recG) [Legionella pneumophila strain ERS1305867]
MLSNSCEYLTGVGPTIAAKLAKCGIFTIQDLLFHLPYKYQDRTRITPIQDLRSNEWCVIAGHVCKTEIKYGKRMMLNCYV
EDKTGVVKLRFFHFNKQQIQALNNSTMIRAFGEVRGFNNQLEMIHPEYQLIDQESDFHVEETLTPIYPSTQGLTQTRLRQ
LVKIALEQSEHELHQLEWMSEKQLQENNFYDLGEAIKLLHNPPPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFARQS
RSKLQAPAILFDNAIHKRFIESLPFSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVGAGKTIIAALAALQAISQGFQVAF
MAPTDLLSEQHTNSLSKWLEPIGINVLRLSGKMKATERKNALAALQDNSCQLIVGTHALFQEQVEFACLGLVIIDEQHRF
GVEQRLLLQQKGQLNQLIPHQLLMTATPIPRTLSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAIANG
KQAYWVCTLIEESEKLQCIAATDTSKKLQEQLSFARVGLIHGRMKALEKEATMAAFKQGEIDLLVATTVIEVGVDVPNAS
LMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSPLSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTRQTGF
RQFKIANLQRDKTLFTILRPIAKQLVLEKTAIARQITQRWLGNFEQFLQS

Nucleotide


Download         Length: 2073 bp        

>NTDB_id=370110 GCO85_RS10415 WP_061637190.1 2309587..2311659(+) (recG) [Legionella pneumophila strain ERS1305867]
GTGCTGAGTAACTCTTGTGAATATTTAACTGGCGTCGGCCCAACCATTGCAGCAAAACTTGCTAAATGTGGAATTTTCAC
GATACAAGACTTGCTTTTCCACTTGCCTTATAAATATCAAGACAGAACCAGGATAACACCAATTCAGGATTTACGCTCCA
ATGAATGGTGCGTTATCGCGGGGCATGTATGCAAAACTGAAATAAAATACGGCAAAAGGATGATGTTGAATTGCTATGTG
GAAGATAAAACAGGAGTAGTTAAGCTTCGTTTTTTTCATTTCAATAAGCAGCAAATTCAGGCTTTGAATAATAGCACCAT
GATTCGAGCTTTTGGCGAAGTCCGCGGATTTAACAACCAATTGGAGATGATTCATCCAGAATATCAATTAATTGACCAAG
AATCAGATTTCCACGTGGAAGAAACGCTTACGCCAATTTATCCATCGACTCAAGGCTTGACTCAAACCCGATTAAGGCAG
TTAGTTAAAATAGCCCTGGAACAATCTGAACACGAACTTCATCAATTGGAATGGATGAGTGAAAAACAATTACAGGAAAA
CAATTTTTATGATTTGGGCGAAGCCATTAAATTACTACATAACCCTCCACCAGATATCTCCCTCTCCAACCTCGAAGCCG
GCGAACATCCTGCTCTCAAGCGGTTAATATTTGATGAATTACTGGCACAGCAGCTCAGTATGCAATTTGCAAGACAGTCA
CGCAGCAAACTCCAAGCTCCCGCTATACTTTTCGATAATGCAATTCATAAACGTTTTATCGAATCATTGCCATTCAGTCT
TACAAACGCACAACAACGTGTTTTTAAAGAAATCAGCGTTGATTTAACTCAAAGCAAACCCATGCTTCGTTTGCTGCAAG
GAGATGTTGGGGCGGGTAAAACCATTATCGCGGCACTAGCCGCCCTTCAAGCCATTTCACAAGGATTTCAGGTTGCTTTT
ATGGCACCAACCGATTTATTAAGTGAACAACATACAAATAGCCTCAGTAAATGGTTAGAACCTATCGGTATTAATGTATT
AAGACTGAGCGGTAAAATGAAAGCCACAGAACGAAAAAATGCGCTTGCAGCCCTGCAGGACAACAGCTGTCAGCTCATTG
TTGGAACTCATGCTTTATTTCAGGAGCAAGTCGAATTCGCTTGTTTGGGTTTGGTCATTATTGACGAACAACACCGATTT
GGAGTAGAACAACGGCTCCTTCTGCAACAAAAAGGGCAATTAAACCAATTAATCCCTCATCAATTATTAATGACAGCCAC
CCCTATTCCAAGAACCCTGTCAATGTCTCATTTTGCTCATTTGGATATATCGGTCATCGATGAACTACCACCTGGACGTA
TGCCAATTACAACAGCGGTATTGAACCAGGATAAGCGTGAACTCATTATCGAACGTTTGCAAGCAGCAATCGCCAACGGC
AAACAGGCTTACTGGGTCTGTACCCTTATAGAAGAATCTGAAAAATTACAATGCATAGCAGCAACAGATACCTCAAAAAA
ATTACAAGAACAGCTCTCTTTCGCGCGTGTTGGTCTTATTCATGGGAGAATGAAAGCGCTTGAAAAAGAAGCTACTATGG
CGGCCTTTAAACAAGGCGAGATTGATTTATTGGTGGCAACTACAGTTATTGAAGTTGGTGTAGATGTTCCTAATGCCAGT
TTAATGATCATTGAAAATGCGGAGCGACTTGGTTTGTCGCAGTTACATCAATTACGCGGGCGCGTCGGCAGAGGTAATAA
TCAATCTCATTGTCTATTACTTTATCAATCTCCTCTATCACAGCAAGGTGCTGAACGTCTCAAGATCATGCGTTCAACAA
CAGACGGTTTTCTAATCTCCGAAAAGGATTTGGAGTTAAGAGGCTCAGGAGAAATATTAGGAACCAGACAGACTGGCTTT
AGACAATTTAAAATAGCTAACTTACAACGCGATAAAACCCTCTTCACTATTTTACGTCCAATTGCAAAACAACTGGTGCT
GGAAAAAACAGCAATCGCCAGACAAATTACACAACGATGGCTGGGCAATTTTGAACAATTTTTGCAAAGTTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(613-668)

Helicase conserved C-terminal domain (Helicase_C)

(469-586)

DEAD/DEAH box helicase (DEAD)

(270-431)

RecG wedge domain (RecG_wedge)

(7-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

47.774

97.681

0.467
  recG Bacillus subtilis subsp. subtilis str. 168

38.724

97.681

0.378
  recG/mmsA Streptococcus pneumoniae R6

38.681

96.667

0.374
  recG/mmsA Streptococcus pneumoniae R36A

38.681

96.667

0.374