Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   D073_RS02005 Genome accession   NZ_CP041145
Coordinates   401678..402631 (+) Length   317 a.a.
NCBI ID   WP_015239156.1    Uniprot ID   A0AAP3YGS2
Organism   Bacillus velezensis strain At1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 396678..407631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D073_RS01980 (D073_0381) - 396725..398158 (+) 1434 WP_020955322.1 ATP-binding protein -
  D073_RS01985 (D073_0382) rapC 398311..399459 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  D073_RS01990 (D073_0383) phrC 399443..399562 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  D073_RS01995 - 399710..399820 (-) 111 WP_369878517.1 YjcZ family sporulation protein -
  D073_RS02000 (D073_0384) - 399900..401264 (-) 1365 WP_020955323.1 aspartate kinase -
  D073_RS02005 (D073_0385) ceuB 401678..402631 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  D073_RS02010 (D073_0386) - 402621..403568 (+) 948 WP_140983749.1 iron chelate uptake ABC transporter family permease subunit -
  D073_RS02015 (D073_0387) - 403562..404320 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  D073_RS02020 (D073_0388) - 404342..405286 (+) 945 WP_007410275.1 siderophore ABC transporter substrate-binding protein -
  D073_RS02025 (D073_0389) - 405328..406752 (-) 1425 WP_007410276.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.24 Da        Isoelectric Point: 9.6741

>NTDB_id=369796 D073_RS02005 WP_015239156.1 401678..402631(+) (ceuB) [Bacillus velezensis strain At1]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=369796 D073_RS02005 WP_015239156.1 401678..402631(+) (ceuB) [Bacillus velezensis strain At1]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGGACGATGGACTGGGCAAGGCTCGGAATCTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGGAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATTGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCATCATGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCAGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536

Multiple sequence alignment