Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   FIM06_RS15355 Genome accession   NZ_CP041144
Coordinates   3067106..3067750 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain UCMB5044     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3062106..3072750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIM06_RS15320 (FIM06_2850) - 3063291..3063722 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  FIM06_RS15325 (FIM06_2851) - 3063722..3064063 (+) 342 WP_082998530.1 Na(+)/H(+) antiporter subunit C -
  FIM06_RS15330 (FIM06_2852) - 3064056..3065537 (+) 1482 WP_105937379.1 Na+/H+ antiporter subunit D -
  FIM06_RS15335 (FIM06_2853) - 3065543..3066019 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  FIM06_RS15340 (FIM06_2854) - 3066019..3066303 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  FIM06_RS15345 (FIM06_2855) mnhG 3066287..3066661 (+) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  FIM06_RS15350 (FIM06_2856) - 3066701..3067084 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  FIM06_RS15355 (FIM06_2857) comA 3067106..3067750 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  FIM06_RS15360 (FIM06_2858) comP 3067831..3070122 (-) 2292 WP_140995956.1 histidine kinase Regulator
  FIM06_RS15365 comX 3070134..3070298 (-) 165 WP_007613432.1 competence pheromone ComX -
  FIM06_RS15370 (FIM06_2859) - 3070298..3071209 (-) 912 WP_079891857.1 polyprenyl synthetase family protein -
  FIM06_RS15375 (FIM06_2860) degQ 3071362..3071502 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  FIM06_RS15385 (FIM06_2862) - 3071968..3072309 (+) 342 WP_007613435.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=369769 FIM06_RS15355 WP_003152052.1 3067106..3067750(-) (comA) [Bacillus velezensis strain UCMB5044]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=369769 FIM06_RS15355 WP_003152052.1 3067106..3067750(-) (comA) [Bacillus velezensis strain UCMB5044]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment