Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | D069_RS11940 | Genome accession | NZ_CP041143 |
| Coordinates | 2452086..2452421 (+) | Length | 111 a.a. |
| NCBI ID | WP_003153104.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain UCMB5007 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2447086..2457421
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D069_RS11920 (D069_2219) | gcvT | 2447692..2448792 (-) | 1101 | WP_012117974.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| D069_RS11925 (D069_2220) | - | 2449216..2450886 (+) | 1671 | WP_045208236.1 | DEAD/DEAH box helicase | - |
| D069_RS11930 (D069_2221) | - | 2450908..2451702 (+) | 795 | WP_007612541.1 | YqhG family protein | - |
| D069_RS11935 (D069_2222) | sinI | 2451879..2452052 (+) | 174 | WP_007612543.1 | anti-repressor SinI | Regulator |
| D069_RS11940 (D069_2223) | sinR | 2452086..2452421 (+) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
| D069_RS11945 (D069_2224) | tasA | 2452469..2453254 (-) | 786 | WP_044802563.1 | biofilm matrix protein TasA | - |
| D069_RS11950 (D069_2225) | sipW | 2453319..2453903 (-) | 585 | WP_015240205.1 | signal peptidase I SipW | - |
| D069_RS11955 (D069_2226) | tapA | 2453875..2454546 (-) | 672 | WP_044802562.1 | amyloid fiber anchoring/assembly protein TapA | - |
| D069_RS11960 (D069_2227) | - | 2454805..2455134 (+) | 330 | WP_038459175.1 | DUF3889 domain-containing protein | - |
| D069_RS11965 (D069_2228) | - | 2455175..2455354 (-) | 180 | WP_022552966.1 | YqzE family protein | - |
| D069_RS11970 (D069_2229) | comGG | 2455411..2455788 (-) | 378 | WP_038459177.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| D069_RS11975 (D069_2230) | comGF | 2455789..2456289 (-) | 501 | WP_228842201.1 | competence type IV pilus minor pilin ComGF | - |
| D069_RS11980 (D069_2231) | comGE | 2456198..2456512 (-) | 315 | WP_105937524.1 | competence type IV pilus minor pilin ComGE | - |
| D069_RS11985 (D069_2232) | comGD | 2456496..2456933 (-) | 438 | WP_007612572.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| D069_RS11990 (D069_2233) | comGC | 2456923..2457231 (-) | 309 | WP_003153087.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12972.64 Da Isoelectric Point: 7.2023
>NTDB_id=369677 D069_RS11940 WP_003153104.1 2452086..2452421(+) (sinR) [Bacillus velezensis strain UCMB5007]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=369677 D069_RS11940 WP_003153104.1 2452086..2452421(+) (sinR) [Bacillus velezensis strain UCMB5007]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
99.099 |
100 |
0.991 |