Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FY128_RS06700 Genome accession   NZ_CP048593
Coordinates   1370011..1372116 (+) Length   701 a.a.
NCBI ID   WP_112497451.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain But001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1365011..1377116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY128_RS06685 (FY128_06635) - 1365289..1365633 (-) 345 WP_065687278.1 hypothetical protein -
  FY128_RS06690 (FY128_06640) mfd 1366011..1369508 (-) 3498 WP_019566117.1 transcription-repair coupling factor -
  FY128_RS06695 (FY128_06645) - 1369512..1369823 (-) 312 WP_113473079.1 succinate dehydrogenase assembly factor 2 -
  FY128_RS06700 (FY128_06650) recG 1370011..1372116 (+) 2106 WP_112497451.1 ATP-dependent DNA helicase RecG Machinery gene
  FY128_RS06705 (FY128_06655) - 1372129..1372401 (+) 273 WP_003515743.1 hypothetical protein -
  FY128_RS06710 (FY128_06660) - 1372456..1372713 (+) 258 WP_003515745.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  FY128_RS06715 (FY128_06665) - 1372710..1373093 (+) 384 WP_112292232.1 type II toxin-antitoxin system VapC family toxin -
  FY128_RS06720 (FY128_06670) - 1373097..1373765 (-) 669 WP_003515749.1 DUF502 domain-containing protein -
  FY128_RS06725 (FY128_06675) - 1373779..1374282 (-) 504 WP_003515751.1 GNAT family N-acetyltransferase -
  FY128_RS06730 (FY128_06680) glmS 1374279..1376105 (-) 1827 WP_113473077.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76547.20 Da        Isoelectric Point: 7.1162

>NTDB_id=369616 FY128_RS06700 WP_112497451.1 1370011..1372116(+) (recG) [Agrobacterium tumefaciens strain But001]
MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRENADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ
PAPPGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAV
YPMTAGLSPKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPIRAKGDIAAKILSQLPFSLTPSQNASVKDILTDMASEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHFATISKLANAAGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL
KEGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGVNIGLIHGRMSGPEKDAAMLAFKNGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=369616 FY128_RS06700 WP_112497451.1 1370011..1372116(+) (recG) [Agrobacterium tumefaciens strain But001]
ATGCGTCCCGCCATTCTCGATCCGCTATTTGCTTCAGTCTCCACCCTTGCCGGTGTGGGGCCGAAGCTTGCCGACCTTCT
GGCCAAACTGCTGAGCCGGGAAAATGCCGACGACACCCGCGTGATCGATCTTCTGTTCCACGCACCATCAAACGTCATCG
ACCGGCGCAACCGCCCGGGCATCGCGCTTGCCGCTCCCGGCGCCATTGTCACCATCCAGGGACGTGTCGACCGGCATCAG
CCAGCTCCACCGGGCAATCGTTCCGCGCCCTACCGTGTTTTCCTGCATGACGAGACCGGGGAACTGGCGCTGACCTTCTT
CCGCGCCAAGGGAGACTGGCTTTCCAAGGCCTTGCCCGTCGATGAAGAGGTTCTCGTCAGCGGCAAGGTGGACTGGTTCA
ACGGCCGCGCCTCCATGGTGCATCCGGATTTCATGGTGAAGCTCTCCGAGGCAGAGAACCTGCCGCTGGTCGAAGCCGTT
TATCCGATGACAGCCGGGCTGTCTCCGAAGGTGCTGCGGCGGGCAATTGAAGGCGGACTTTCGAAACTGCCGGTCTTTCC
CGAATGGATCGACGAGACCCTGAAGACCCGTCAGGGGTTCGGCGACGTGGCATCGAGCTTCCGTGAGTTGCACGACCCAC
GCGACAGCGCCGATATCGATCCTCAGGCCCCGGCACGCAGACGGCTCGCCTACGACGAATTCCTGGCCGGGCAGCTGTCA
CTGGCGCTGGTGCGGCAAAGACTGCGCAAGGTCGCGGGCCAGCCGATCCGCGCCAAGGGGGACATTGCTGCAAAAATCCT
GTCGCAACTGCCCTTCTCCCTGACGCCGAGCCAGAATGCCTCGGTGAAAGATATCCTGACCGATATGGCCAGCGAGGACC
GTATGTTGCGGCTGTTGCAGGGCGATGTCGGCGCGGGCAAGACGCTGGTGGCGCTGATGGCTATGGCAACCGCCGTCGAG
GCCGGCGGACAGGCGGTGTTGATGGCCCCGACCGAAATTCTTGCCCGGCAGCATTTCGCCACCATCTCCAAACTCGCCAA
TGCCGCGGGCATTACGGTTGAGGTGCTGACCGGCCGCACCAAGGGCAAGGAGCGTCGCGAGATCGAAGAACGCGTGGCCT
CCGGTGAGGCACAGATCGTCATCGGCACCCACGCGCTGTTCCAGGACAGCGTGAGTTACAAGAACCTCGTGCTGGCCGTG
GTGGATGAGCAGCACCGTTTCGGCGTACACCAGCGCCTGCGTCTCACCGCCAAGGGCATCACGCCGCATATGCTTGTTAT
GACCGCCACGCCCATTCCGCGCACGCTTGTGCTGGCCGCCTTCGGCGACATGGATGTGTCGAAACTCACCGAAAAACCGG
CCGGACGAAAACCCATCCAGACCGTGACAATCCCCACAGAGCGCATCGGCGACATCGTCGAGCGGCTGCGCGCCGCGCTG
AAGGAGGGCAAGAAGGCCTACTGGATCTGCCCGCTGGTGGAGGAGACGGAAGAGTCCGACCTGATGTCGGCGGAAGAACG
ACATGCGGTTCTCTCGCAGATGCTCGGTGTCAATATCGGTCTCATCCATGGGCGCATGAGCGGCCCGGAGAAGGACGCCG
CCATGCTGGCTTTCAAGAACGGCGAAACCCGGCTGCTGGTGGCAACGACAGTGGTGGAAGTGGGTGTCGACGTTCCGGAC
GCCACGATCATGGTCATCGAACATGCCGAACGTTTCGGCCTCGCCCAGCTTCACCAGCTGCGTGGCCGGGTTGGACGCGG
TGACGAGGCCTCCACCTGCATCCTGCTCTACAAGGGGCCGCTCAGCGAAAACGGCCGCGCCCGACTTTCCATCCTGCGCG
ACAGCGAGGACGGCTTCCTGATTGCCGAAGAGGATTTGAAGCTGCGCGGCGAAGGCGAACTCCTCGGCACCCGCCAGTCC
GGCACCCCGGGCTTCCGCATCGCCAGCCTCGAAGCCCATGCCGATCTCCTGGAAATCGCCCGCAAGGACGCCGCCTATGT
CATCGAGCGCGACCCCGAACTGACCGGCCCGCGCGGCGAAAGCCTGCGCACCCTGCTCTATCTGCACCGCCGCGACGAAG
CTATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(275-432)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-681)

RecG wedge domain (RecG_wedge)

(18-180)

Helicase conserved C-terminal domain (Helicase_C)

(474-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

42.169

94.722

0.399
  recG/mmsA Streptococcus pneumoniae R6

40.441

97.004

0.392
  recG/mmsA Streptococcus pneumoniae R36A

40.441

97.004

0.392
  recG Bacillus subtilis subsp. subtilis str. 168

38.663

98.146

0.379