Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FY136_RS07505 Genome accession   NZ_CP048551
Coordinates   1496395..1498500 (+) Length   701 a.a.
NCBI ID   WP_262515551.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Kin002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1491395..1503500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY136_RS07490 (FY136_07430) - 1491590..1491928 (-) 339 WP_174029584.1 hypothetical protein -
  FY136_RS07495 (FY136_07435) mfd 1492392..1495889 (-) 3498 WP_262515550.1 transcription-repair coupling factor -
  FY136_RS07500 (FY136_07440) - 1495894..1496205 (-) 312 WP_065655165.1 succinate dehydrogenase assembly factor 2 -
  FY136_RS07505 (FY136_07445) recG 1496395..1498500 (+) 2106 WP_262515551.1 ATP-dependent DNA helicase RecG Machinery gene
  FY136_RS07510 (FY136_07450) - 1498513..1498785 (+) 273 WP_046798274.1 hypothetical protein -
  FY136_RS07515 (FY136_07455) - 1498840..1499097 (+) 258 WP_262515552.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  FY136_RS07520 (FY136_07460) - 1499094..1499477 (+) 384 WP_110757001.1 type II toxin-antitoxin system VapC family toxin -
  FY136_RS07525 (FY136_07465) - 1499479..1500147 (-) 669 WP_065115901.1 DUF502 domain-containing protein -
  FY136_RS07530 (FY136_07470) - 1500161..1500664 (-) 504 WP_262515553.1 GNAT family N-acetyltransferase -
  FY136_RS07535 (FY136_07475) glmS 1500661..1502487 (-) 1827 WP_262515554.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76405.09 Da        Isoelectric Point: 7.2726

>NTDB_id=369429 FY136_RS07505 WP_262515551.1 1496395..1498500(+) (recG) [Agrobacterium tumefaciens strain Kin002]
MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRESADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ
PPPPGNRNAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAV
YPMTAGLSAKVLRKAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIEPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPIRAKGDIAAKILSQLPFSLTASQSAAVKDILTDMAGEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHYATISKLAQAAGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL
KEGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMSGPEKDAAMLAFKNGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGNALRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=369429 FY136_RS07505 WP_262515551.1 1496395..1498500(+) (recG) [Agrobacterium tumefaciens strain Kin002]
ATGCGCCCGGCCATTCTCGATCCGCTGTTTGCCTCCGTCTCCACCCTTGCCGGTGTGGGGCCGAAGCTCGCCGATCTTCT
GGCCAAGCTGTTGAGCCGGGAAAGCGCCGACGACACCCGCGTCATCGATCTCCTGTTCCACGCACCATCCAACGTCATCG
ACCGCCGCAACCGCCCCGGCATCGCACTTGCCGCACCCGGAGCCATTGTCACCATTCAGGGACGCGTCGACCGCCACCAG
CCGCCGCCGCCGGGAAACCGCAACGCGCCCTATCGCGTCTTCCTGCATGACGAGACCGGCGAACTGGCGCTGACCTTCTT
CCGCGCCAAGGGCGACTGGCTGTCCAAGGCCCTGCCTGTGGATGAGGAGGTTCTCGTCAGCGGCAAGGTGGACTGGTTCA
ACGGCCGCGCCTCCATGGTGCATCCGGATTTCATGGTGAAGCTGTCAGAGGCGGAAAACCTGCCTTTGGTGGAAGCCGTT
TATCCCATGACCGCCGGGCTGTCTGCCAAGGTGCTGCGCAAGGCAATCGAAGGCGGGCTTTCAAAGCTGCCGGTCTTTCC
CGAATGGATCGACGAGACACTGAAGACGAGGCAGGGCTTCGGCGATGTCGCCTCAAGCTTCCGCGAATTGCACGACCCGC
GCGACAGCGCCGATATCGAGCCGCAGGCCCCGGCGCGCAGGAGGCTGGCTTATGACGAATTCCTTGCCGGGCAGCTGTCA
CTAGCGCTGGTGCGCCAGCGGCTGCGCAAGGTGGCTGGCCAGCCGATCCGCGCCAAAGGCGATATCGCCGCAAAAATCCT
GTCGCAGCTGCCCTTCTCGCTGACGGCAAGCCAGAGTGCTGCGGTGAAGGATATCCTCACCGACATGGCCGGTGAAGACC
GCATGTTGCGGCTGCTTCAGGGCGATGTCGGCGCCGGAAAGACATTGGTGGCGCTGATGGCCATGGCAACGGCGGTGGAG
GCCGGCGGACAGGCGGTGCTGATGGCACCGACCGAAATCCTCGCCCGCCAGCACTACGCCACCATCTCCAAACTCGCCCA
GGCAGCGGGCATCACCGTCGAGGTCCTGACCGGCCGCACCAAGGGCAAGGAGCGCCGCGAGATCGAGGAGCGCGTCGCAT
CAGGCGAAGCGCAGATCGTCATCGGCACCCATGCGCTGTTTCAGGACAGCGTGAGTTACAAAAACCTCGTGCTTGCGGTG
GTGGACGAACAGCACCGTTTCGGCGTGCACCAGCGCCTGCGCCTCACCGCCAAGGGCATCACGCCACACATGCTGGTCAT
GACCGCCACACCCATTCCGCGCACGCTGGTTCTGGCCGCCTTCGGCGACATGGATGTCTCCAAGCTCACCGAAAAACCGG
CCGGCCGCAAACCCATCCAGACGGTGACGATCCCCACGGAGCGGATCGGCGATATTGTCGAGAGGCTGCGCGCGGCGCTG
AAGGAAGGCAAGAAGGCCTACTGGATCTGCCCGCTGGTGGAAGAAACGGAAGAATCCGATCTGATGTCGGCGGAGGAACG
CCACGCGGTTCTCTCCCAGATGCTCGGAGCCAATATCGGTCTCATCCATGGCCGCATGAGCGGCCCGGAGAAGGACGCCG
CCATGCTGGCCTTCAAGAACGGCGAAACCCGGCTGCTGGTGGCGACAACAGTGGTGGAAGTCGGCGTCGATGTGCCTGAT
GCGACGATCATGGTCATCGAACACGCCGAACGTTTCGGCCTTGCCCAGCTGCACCAGCTGCGCGGCCGTGTAGGGCGCGG
CGACGAGGCCTCTACCTGCATCCTGCTCTATAAAGGCCCGCTCAGCGAAAACGGCCGTGCCCGGCTCTCCATCCTGCGTG
ACAGCGAGGACGGCTTCCTGATCGCCGAAGAGGATTTGAAGCTGCGCGGTGAAGGCGAGCTGCTCGGCACCCGTCAATCA
GGCACGCCGGGCTTCCGCATCGCCAGCCTCGAGGCCCATGCCGACCTTCTGGAAATCGCCCGCAAGGACGCAGCCTACGT
AATTGAGCGCGACCCCGAACTGACAGGCCCGCGCGGCAATGCGCTACGCACCCTGCTCTATCTGCACCGCCGCGACGAAG
CGATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(275-432)

RecG wedge domain (RecG_wedge)

(18-181)

Helicase conserved C-terminal domain (Helicase_C)

(474-587)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

41.566

94.722

0.394
  recG/mmsA Streptococcus pneumoniae R6

39.676

96.719

0.384
  recG/mmsA Streptococcus pneumoniae R36A

39.676

96.719

0.384
  recG Bacillus subtilis subsp. subtilis str. 168

38.921

97.86

0.381