Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FY141_RS07625 Genome accession   NZ_CP048532
Coordinates   1500615..1502720 (+) Length   701 a.a.
NCBI ID   WP_080866227.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Sta002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1495615..1507720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY141_RS07610 (FY141_07550) - 1496123..1496464 (-) 342 WP_003508033.1 hypothetical protein -
  FY141_RS07615 (FY141_07555) mfd 1496614..1500111 (-) 3498 WP_099085267.1 transcription-repair coupling factor -
  FY141_RS07620 (FY141_07560) - 1500115..1500426 (-) 312 WP_003508031.1 succinate dehydrogenase assembly factor 2 -
  FY141_RS07625 (FY141_07565) recG 1500615..1502720 (+) 2106 WP_080866227.1 ATP-dependent DNA helicase RecG Machinery gene
  FY141_RS07630 (FY141_07570) - 1502733..1503005 (+) 273 WP_003508029.1 hypothetical protein -
  FY141_RS07635 (FY141_07575) - 1503060..1503317 (+) 258 WP_060724304.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  FY141_RS07640 (FY141_07580) - 1503314..1503697 (+) 384 WP_060724303.1 type II toxin-antitoxin system VapC family toxin -
  FY141_RS07645 (FY141_07585) - 1503701..1504369 (-) 669 WP_003508022.1 DUF502 domain-containing protein -
  FY141_RS07650 (FY141_07590) - 1504383..1504886 (-) 504 WP_060726324.1 GNAT family N-acetyltransferase -
  FY141_RS07655 (FY141_07595) glmS 1504883..1506709 (-) 1827 WP_099085266.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  FY141_RS07660 (FY141_07600) - 1506646..1506888 (-) 243 WP_141681089.1 hypothetical protein -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76388.06 Da        Isoelectric Point: 7.4674

>NTDB_id=369283 FY141_RS07625 WP_080866227.1 1500615..1502720(+) (recG) [Agrobacterium tumefaciens strain Sta002]
MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRENADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ
PPPPGNRSAPYRIFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAV
YPMTAGLSPKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRGLHDPRDSADIEPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPIRAKGDVAAKILSQLPFSLTPSQSAAVKDILTDMAGEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHYATISKLAQAAGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRSAL
KDGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMSGPEKDAAMLAFKSGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGNALRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=369283 FY141_RS07625 WP_080866227.1 1500615..1502720(+) (recG) [Agrobacterium tumefaciens strain Sta002]
ATGCGCCCGGCCATTCTCGATCCGCTGTTTGCTTCCGTCTCCACCCTTGCAGGTGTGGGGCCGAAGCTTGCCGATCTTCT
GGCCAAGCTCTTGAGCCGGGAAAACGCCGACGACACCCGCGTGATCGATCTCCTGTTCCACGCGCCATCGAACGTTATCG
ACCGCCGAAACCGCCCCGGCATCGCGCTGGCCGCGCCCGGCGCCATTGTCACCATTCAGGGACGCGTGGACCGCCACCAG
CCGCCACCGCCGGGAAACCGCTCCGCGCCCTATCGCATCTTCCTGCATGACGAGACCGGCGAACTGGCCCTGACCTTCTT
CCGCGCCAAGGGCGACTGGCTGTCCAAGGCACTGCCCGTCGATGAGGAGGTTCTCGTCAGCGGCAAGGTGGACTGGTTCA
ATGGCCGCGCCTCCATGGTGCATCCGGATTTCATGGTGAAACTTTCCGAGGCCGAAAACCTGCCACTTGTGGAAGCCGTT
TATCCCATGACCGCCGGACTGTCCCCCAAGGTGCTGCGGCGGGCGATCGAAGGCGGGCTATCGAAGCTGCCGGTCTTTCC
GGAGTGGATCGATGAAACGCTGAAGACCCGGCAAGGCTTCGGCGATGTCGCTTCGAGCTTCCGTGGGTTGCACGACCCGC
GTGACAGCGCCGATATCGAGCCGCAGGCTCCAGCGCGCAGGCGGCTTGCCTATGACGAATTCCTCGCCGGGCAGCTGTCA
CTCGCATTGGTGCGTCAGCGGCTGCGCAAAGTGGCGGGCCAGCCGATCCGCGCCAAGGGTGATGTCGCCGCAAAAATCCT
GTCGCAACTGCCCTTCTCGCTGACACCGAGCCAGAGCGCTGCGGTGAAGGATATTCTGACTGACATGGCCGGCGAAGACC
GCATGCTTCGCCTGCTGCAGGGCGATGTCGGCGCAGGCAAGACGCTGGTGGCGCTGATGGCGATGGCAACGGCCGTGGAG
GCCGGCGGACAGGCGGTGCTGATGGCCCCGACCGAAATCCTCGCCCGGCAGCACTACGCCACCATTTCCAAGCTCGCTCA
GGCCGCGGGCATTACCGTCGAAGTGCTGACCGGCCGCACCAAGGGCAAGGAGCGGCGCGAGATCGAGGAGCGCGTCGCAT
CAGGTGAGGCACAGATCGTCATCGGCACCCATGCGTTGTTTCAGGACAGCGTGAGTTACAAGAACCTCGTGCTGGCCGTG
GTGGACGAACAGCACCGTTTCGGCGTTCATCAACGCCTGCGCCTCACCGCCAAGGGCATCACCCCGCATATGCTGGTCAT
GACTGCCACGCCCATTCCGCGCACGCTGGTTCTGGCCGCCTTCGGCGACATGGATGTTTCGAAGCTCACCGAAAAGCCGG
CCGGCCGCAAACCTATCCAAACGGTGACGATCCCCACCGAACGGATCGGCGACATTGTCGAGCGGCTGCGTTCCGCGCTG
AAGGATGGCAAGAAGGCCTACTGGATCTGCCCGCTGGTGGAAGAAACGGAAGAATCCGACCTTATGTCGGCGGAGGAGCG
GCACGCAGTTCTCTCGCAGATGCTGGGCGCCAATATCGGCCTCATCCATGGCCGCATGAGCGGCCCGGAGAAGGACGCCG
CCATGCTCGCCTTCAAGAGCGGCGAAACCCGGCTTCTGGTAGCGACGACCGTGGTGGAAGTTGGCGTCGACGTGCCTGAC
GCGACGATCATGGTCATCGAACATGCCGAACGTTTCGGCCTTGCCCAGCTTCACCAGCTGCGCGGACGCGTGGGGCGCGG
TGACGAGGCCTCCACCTGCATCCTGCTCTACAAAGGCCCGCTCAGCGAAAACGGCCGCGCCCGGCTTTCCATCCTGCGTG
ACAGCGAGGATGGCTTCCTGATCGCGGAAGAGGATTTGAAGCTGCGCGGCGAAGGCGAGTTGCTCGGCACCCGCCAGTCC
GGCACGCCGGGATTCCGCATCGCCAGCCTGGAAGCCCACGCCGACCTTCTGGAAATCGCCCGCAAGGACGCGGCCTACGT
CATCGAGCGCGACCCCGAACTGACGGGCCCGCGCGGCAATGCGCTGCGCACCCTGCTCTACCTGCACCGCCGCGACGAAG
CGATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-682)

RecG wedge domain (RecG_wedge)

(18-180)

DEAD/DEAH box helicase (DEAD)

(275-432)

Helicase conserved C-terminal domain (Helicase_C)

(476-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

42.018

94.722

0.398
  recG/mmsA Streptococcus pneumoniae R6

39.971

96.719

0.387
  recG/mmsA Streptococcus pneumoniae R36A

39.971

96.719

0.387
  recG Bacillus subtilis subsp. subtilis str. 168

38.856

97.29

0.378