Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   FJM50_RS03185 Genome accession   NZ_CP041066
Coordinates   342288..342650 (-) Length   120 a.a.
NCBI ID   WP_016765913.1    Uniprot ID   A0A1I2XGS5
Organism   Priestia megaterium strain KNU-01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 337776..349018 342288..342650 within 0


Gene organization within MGE regions


Location: 337776..349018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJM50_RS03175 - 337776..340406 (+) 2631 WP_140456567.1 DEAD/DEAH box helicase -
  FJM50_RS03180 - 340704..341750 (+) 1047 WP_078082224.1 LysM peptidoglycan-binding domain-containing protein -
  FJM50_RS03185 ssbB 342288..342650 (-) 363 WP_016765913.1 single-stranded DNA-binding protein Machinery gene
  FJM50_RS03190 - 342747..343184 (+) 438 WP_014457773.1 YwpF-like family protein -
  FJM50_RS03195 - 343708..344130 (+) 423 WP_013059787.1 helix-turn-helix domain-containing protein -
  FJM50_RS03200 fabZ 344159..344593 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  FJM50_RS03205 - 344677..345498 (-) 822 WP_013059789.1 flagellar hook-basal body protein -
  FJM50_RS03210 - 345522..346346 (-) 825 WP_029319385.1 flagellar hook-basal body protein -
  FJM50_RS03215 - 346461..347462 (-) 1002 WP_013059791.1 rod shape-determining protein -
  FJM50_RS03220 spoIIID 347649..347912 (-) 264 WP_013059792.1 sporulation transcriptional regulator SpoIIID -
  FJM50_RS03225 - 348188..349018 (-) 831 WP_028409695.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13472.19 Da        Isoelectric Point: 7.1647

>NTDB_id=369275 FJM50_RS03185 WP_016765913.1 342288..342650(-) (ssbB) [Priestia megaterium strain KNU-01]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGFSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=369275 FJM50_RS03185 WP_016765913.1 342288..342650(-) (ssbB) [Priestia megaterium strain KNU-01]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTGGTAGGTGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTTTTCTTCATTTGATTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I2XGS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

88.333

0.467

Multiple sequence alignment