Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FY143_RS06875 Genome accession   NZ_CP048522
Coordinates   1395016..1397121 (+) Length   701 a.a.
NCBI ID   WP_111790302.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Sta004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1390016..1402121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY143_RS06860 (FY143_06790) - 1390297..1390641 (-) 345 WP_013636325.1 hypothetical protein -
  FY143_RS06865 (FY143_06795) mfd 1391016..1394513 (-) 3498 WP_111790301.1 transcription-repair coupling factor -
  FY143_RS06870 (FY143_06800) - 1394517..1394828 (-) 312 WP_003515739.1 succinate dehydrogenase assembly factor 2 -
  FY143_RS06875 (FY143_06805) recG 1395016..1397121 (+) 2106 WP_111790302.1 ATP-dependent DNA helicase RecG Machinery gene
  FY143_RS06880 (FY143_06810) - 1397134..1397406 (+) 273 WP_019566116.1 hypothetical protein -
  FY143_RS06885 (FY143_06815) - 1397461..1397718 (+) 258 WP_003515745.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  FY143_RS06890 (FY143_06820) - 1397715..1398098 (+) 384 WP_035198363.1 type II toxin-antitoxin system VapC family toxin -
  FY143_RS06895 (FY143_06825) - 1398102..1398770 (-) 669 WP_003515749.1 DUF502 domain-containing protein -
  FY143_RS06900 (FY143_06830) - 1398784..1399286 (-) 503 Protein_1357 GNAT family N-acetyltransferase -
  FY143_RS06905 (FY143_06835) glmS 1399283..1401109 (-) 1827 WP_080798336.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76392.99 Da        Isoelectric Point: 6.9835

>NTDB_id=369208 FY143_RS06875 WP_111790302.1 1395016..1397121(+) (recG) [Agrobacterium tumefaciens strain Sta004]
MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRENADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ
PAPPGNRSAPYRVFLHDDTGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAV
YPMTAGLSPKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPISAKGDIAAKILSQLPFSLTPSQNAAVKDILTDMASEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHFATISKLANAAGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL
KEGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMSGPEKDAAMLAFKSGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=369208 FY143_RS06875 WP_111790302.1 1395016..1397121(+) (recG) [Agrobacterium tumefaciens strain Sta004]
ATGCGTCCCGCCATTCTCGATCCGCTATTTGCTTCCGTCTCCACCCTTGCCGGTGTGGGGCCGAAGCTTGCCGACCTTCT
GGCCAAACTGCTGAGCCGGGAAAATGCTGACGACACCCGCGTGATCGATCTTCTGTTCCACGCACCATCAAACGTCATCG
ACCGGCGCAACCGCCCGGGCATCGCGCTTGCCGCTCCCGGCGCCATTGTCACCATCCAGGGACGTGTCGACCGGCATCAG
CCAGCTCCACCGGGCAATCGTTCCGCGCCCTACCGTGTTTTCCTGCATGACGATACCGGGGAACTGGCGCTGACCTTCTT
CCGCGCCAAGGGAGACTGGCTTTCCAAGGCCTTGCCCGTCGATGAAGAGGTTCTCGTCAGCGGCAAGGTGGACTGGTTCA
ACGGCCGCGCCTCCATGGTGCATCCGGATTTCATGGTGAAGCTCTCTGAGGCCGAGAACCTGCCGCTGGTCGAAGCCGTT
TATCCGATGACAGCCGGGCTGTCTCCGAAGGTGCTGCGGCGGGCAATCGAAGGCGGACTTTCGAAACTGCCGGTCTTTCC
CGAATGGATCGACGAGACCCTGAAGACCCGGCAGGGGTTCGGCGACGTGGCATCCAGCTTCCGCGAATTGCACGATCCGC
GCGACAGCGCCGATATCGATCCTCAGGCCCCGGCACGCAGACGGCTCGCCTACGACGAATTCCTGGCCGGGCAGCTGTCA
CTGGCGCTGGTGCGGCAAAGACTGCGCAAGGTCGCGGGCCAGCCGATCAGCGCCAAGGGGGACATTGCTGCAAAAATCCT
GTCGCAACTGCCCTTCTCCCTGACGCCGAGCCAGAATGCCGCGGTGAAAGATATCCTGACCGACATGGCCAGCGAGGACC
GTATGTTGCGGCTGTTGCAGGGCGATGTCGGCGCGGGCAAGACGCTGGTGGCGCTGATGGCTATGGCAACCGCCGTCGAG
GCCGGAGGACAGGCGGTGTTGATGGCCCCGACCGAAATTCTTGCCCGGCAGCATTTCGCCACCATCTCCAAACTCGCCAA
TGCCGCGGGCATCACTGTTGAGGTGCTGACCGGCCGCACCAAGGGCAAGGAGCGTCGCGAGATCGAAGAACGCGTGGCCT
CCGGTGAGGCACAGATCGTCATCGGCACCCACGCGCTGTTCCAGGACAGCGTGAGTTACAAGAACCTCGTGCTGGCCGTG
GTGGATGAGCAGCACCGTTTCGGCGTACACCAGCGCCTGCGTCTCACCGCCAAGGGCATCACGCCGCATATGCTTGTTAT
GACCGCCACGCCCATTCCGCGCACGCTGGTGCTGGCCGCCTTCGGCGACATGGATGTATCAAAACTCACCGAAAAACCGG
CTGGCCGAAAACCCATCCAGACCGTGACAATCCCCACAGAGCGCATCGGCGACATCGTCGAGCGGCTGCGCGCCGCGCTG
AAGGAAGGCAAGAAGGCCTACTGGATCTGCCCGCTGGTGGAGGAGACGGAAGAGTCCGACCTGATGTCGGCGGAAGAACG
ACATGCGGTTCTCTCGCAGATGCTCGGTGCCAATATCGGTCTCATCCATGGGCGCATGAGCGGCCCGGAAAAAGACGCTG
CCATGTTGGCCTTCAAGAGCGGCGAAACCCGGCTGCTGGTGGCAACGACAGTGGTGGAAGTGGGTGTCGACGTTCCGGAC
GCCACGATCATGGTCATCGAACATGCCGAACGTTTCGGCCTCGCCCAGCTTCACCAGCTGCGTGGCCGGGTTGGACGCGG
TGACGAGGCCTCCACCTGCATCCTGCTCTACAAGGGGCCGCTTAGCGAAAACGGCCGCGCCCGACTTTCCATCCTGCGCG
ACAGCGAGGACGGCTTCCTGATTGCGGAAGAGGATTTGAAGCTGCGCGGCGAAGGCGAACTCCTCGGCACCCGCCAGTCC
GGCACCCCGGGCTTCCGCATCGCCAGCCTCGAAGCCCATGCCGATCTCCTGGAAATCGCCCGCAAGGACGCCGCCTATGT
CATCGAGCGCGACCCCGAACTGACCGGCCCGCGCGGCGAAAGCCTGCGCACCCTGCTCTATCTGCACCGCCGCGACGAAG
CTATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(474-587)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-681)

DEAD/DEAH box helicase (DEAD)

(275-432)

RecG wedge domain (RecG_wedge)

(18-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

42.319

94.722

0.401
  recG/mmsA Streptococcus pneumoniae R6

40

97.004

0.388
  recG/mmsA Streptococcus pneumoniae R36A

40

97.004

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

38.517

98.146

0.378