Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FIV54_RS04425 Genome accession   NZ_CP041037
Coordinates   867704..868333 (+) Length   209 a.a.
NCBI ID   WP_000153536.1    Uniprot ID   A0A481NSD5
Organism   Staphylococcus aureus strain NP66     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 862704..873333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV54_RS04400 (FIV54_04405) - 863139..864125 (-) 987 WP_145326043.1 aromatic acid exporter family protein -
  FIV54_RS04405 (FIV54_04410) map 864597..865355 (+) 759 WP_000636138.1 type I methionyl aminopeptidase -
  FIV54_RS04410 (FIV54_04415) - 865572..865958 (+) 387 WP_001110179.1 hypothetical protein -
  FIV54_RS04415 (FIV54_04420) liaF 865973..866674 (+) 702 WP_000149064.1 cell wall-active antibiotics response protein LiaF -
  FIV54_RS04420 (FIV54_04425) vraS 866671..867714 (+) 1044 WP_001017131.1 sensor histidine kinase Regulator
  FIV54_RS04425 (FIV54_04430) vraR 867704..868333 (+) 630 WP_000153536.1 two-component system response regulator VraR Regulator
  FIV54_RS04430 (FIV54_04435) - 868445..869662 (-) 1218 WP_000037079.1 YihY/virulence factor BrkB family protein -
  FIV54_RS04435 (FIV54_04440) - 869940..870215 (-) 276 WP_000428171.1 hypothetical protein -
  FIV54_RS04440 (FIV54_04445) - 870222..870686 (-) 465 WP_000228666.1 low molecular weight protein-tyrosine-phosphatase -
  FIV54_RS04445 (FIV54_04450) - 870833..871033 (+) 201 WP_000180460.1 DUF1128 family protein -
  FIV54_RS04450 (FIV54_04455) - 871036..872292 (+) 1257 WP_001789555.1 aminopeptidase -
  FIV54_RS04455 (FIV54_04460) - 872382..872912 (+) 531 WP_145326046.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23490.21 Da        Isoelectric Point: 5.1703

>NTDB_id=369105 FIV54_RS04425 WP_000153536.1 867704..868333(+) (vraR) [Staphylococcus aureus strain NP66]
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVL
MLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSSGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=369105 FIV54_RS04425 WP_000153536.1 867704..868333(+) (vraR) [Staphylococcus aureus strain NP66]
ATGACGATTAAAGTATTGTTTGTGGATGATCATGAAATGGTACGTATAGGAATTTCAAGTTATCTATCAACGCAAAGTGA
TATTGAAGTAGTTGGTGAAGGCGCTTCTGGTAAGGAAGCAATTGCCAAAGCCCATGAGTTGAAGCCAGATTTAATTTTAA
TGGATTTACTTATGGAAGACATGGATGGTGTAGAAGCGACGACTCAGATTAAAAAAGATTTACCGCAAATTAAAGTATTA
ATGTTAACTAGTTTTATTGAAGATAAAGAGGTATATCGTGCATTAGATGCAGGTGTCGATAGTTACATTTTAAAAACAAC
AAGTGCAAAAGATATCGCCGATGCAGTTCGTAAAACTTCTAGCGGAGAATCTGTTTTTGAACCGGAAGTTTTAGTGAAAA
TGCGTAACCGTATGAAAAAGCGCGCAGAGTTATATGAAATGCTTACAGAACGAGAAATGGAAATATTATTATTGATTGCG
AAAGGTTACTCAAATCAAGAAATTGCTAGTGCATCGCATATTACTATTAAAACGGTTAAGACACATGTGAGTAACATTTT
AAGTAAGTTAGAAGTGCAAGATAGAACACAAGCTGTCATCTATGCATTCCAACATAATTTAATTCAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A481NSD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

99.522

100

0.995
  degU Bacillus subtilis subsp. subtilis str. 168

34.821

100

0.373

Multiple sequence alignment