Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FY157_RS07075 Genome accession   NZ_CP048464
Coordinates   1424487..1426592 (+) Length   701 a.a.
NCBI ID   WP_025593701.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Yub002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1419487..1431592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY157_RS07060 (FY157_06995) - 1419766..1420110 (-) 345 WP_013636325.1 hypothetical protein -
  FY157_RS07065 (FY157_07000) mfd 1420487..1423984 (-) 3498 WP_019566117.1 transcription-repair coupling factor -
  FY157_RS07070 (FY157_07005) - 1423988..1424299 (-) 312 WP_003515739.1 succinate dehydrogenase assembly factor 2 -
  FY157_RS07075 (FY157_07010) recG 1424487..1426592 (+) 2106 WP_025593701.1 ATP-dependent DNA helicase RecG Machinery gene
  FY157_RS07080 (FY157_07015) - 1426605..1426877 (+) 273 WP_003515743.1 hypothetical protein -
  FY157_RS07085 (FY157_07020) - 1426932..1427189 (+) 258 WP_003515745.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  FY157_RS07090 (FY157_07025) - 1427186..1427569 (+) 384 WP_025593704.1 type II toxin-antitoxin system VapC family toxin -
  FY157_RS07095 (FY157_07030) - 1427573..1428241 (-) 669 WP_003515749.1 DUF502 domain-containing protein -
  FY157_RS07100 (FY157_07035) - 1428255..1428758 (-) 504 WP_025593706.1 GNAT family N-acetyltransferase -
  FY157_RS07105 (FY157_07040) glmS 1428755..1430581 (-) 1827 WP_025593708.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76549.18 Da        Isoelectric Point: 7.1162

>NTDB_id=368836 FY157_RS07075 WP_025593701.1 1424487..1426592(+) (recG) [Agrobacterium tumefaciens strain Yub002]
MRPAILDPLFASVSTLSGVGPKLADLLAKLLSRENADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIITIQGRVDRHQ
PAPPGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAV
YPMTAGLSPKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPIRAKGDIAAKILSQLPFSLTPSQNASVKDILTDMASEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHFATISKLANAAGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL
KEGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMSGPEKDAAMLAFKNGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=368836 FY157_RS07075 WP_025593701.1 1424487..1426592(+) (recG) [Agrobacterium tumefaciens strain Yub002]
ATGCGTCCCGCCATTCTCGATCCGCTATTTGCTTCCGTCTCCACCCTTTCCGGTGTGGGGCCGAAGCTTGCCGACCTTCT
GGCCAAACTGCTGAGCCGGGAAAATGCCGACGACACCCGCGTGATCGATCTTCTGTTCCACGCACCATCAAACGTCATCG
ACCGGCGCAACCGCCCGGGCATCGCGCTTGCCGCTCCCGGCGCCATTATCACCATCCAGGGACGTGTCGACCGGCATCAG
CCAGCTCCACCGGGCAATCGTTCCGCGCCCTACCGTGTTTTCCTGCATGACGAGACCGGGGAACTGGCGCTGACCTTCTT
CCGCGCCAAGGGAGACTGGCTTTCCAAGGCCTTGCCCGTCGATGAAGAGGTTCTCGTCAGCGGCAAGGTGGACTGGTTCA
ACGGCCGCGCCTCCATGGTGCATCCGGATTTCATGGTGAAACTCTCCGAGGCCGAGAACCTGCCGCTGGTCGAAGCCGTT
TATCCGATGACAGCCGGGCTGTCTCCGAAGGTGCTGCGGCGGGCAATTGAAGGCGGACTTTCGAAACTGCCGGTCTTTCC
CGAATGGATCGACGAAACGCTGAAGACCCGGCAGGGGTTCGGCGACGTGGCATCGAGCTTCCGTGAGTTGCACGACCCAC
GCGACAGCGCCGATATCGATCCTCAGGCCCCGGCACGCAGACGGCTCGCCTACGACGAATTCTTGGCCGGGCAGCTGTCA
CTGGCGCTGGTGCGGCAAAGACTGCGCAAGGTCGCGGGCCAGCCGATCCGCGCCAAGGGGGACATTGCTGCAAAAATCCT
GTCGCAACTGCCCTTCTCCCTGACGCCGAGCCAGAATGCCTCGGTGAAAGATATCCTGACCGATATGGCCAGCGAGGACC
GTATGTTGCGGCTGTTACAGGGCGATGTCGGCGCGGGCAAGACGCTGGTGGCGCTGATGGCTATGGCAACCGCCGTCGAG
GCCGGAGGACAGGCGGTGTTGATGGCCCCGACCGAAATTCTTGCCCGGCAGCATTTCGCCACCATCTCCAAACTCGCCAA
TGCCGCGGGCATTACGGTTGAGGTGCTGACCGGCCGCACCAAGGGCAAGGAGCGTCGCGAGATCGAAGAACGCGTGGCCT
CCGGTGAGGCACAGATCGTCATCGGCACCCACGCGCTGTTCCAGGACAGCGTGAGTTACAAGAACCTCGTGCTGGCCGTG
GTGGATGAGCAGCACCGTTTCGGCGTACACCAGCGCCTGCGTCTCACCGCCAAGGGCATCACGCCGCATATGCTTGTTAT
GACCGCCACGCCCATTCCGCGCACGCTGGTGCTGGCCGCCTTCGGCGACATGGATGTATCAAAACTCACCGAAAAACCGG
CTGGCCGAAAACCCATCCAGACCGTGACAATCCCCACAGAGCGCATCGGCGACATCGTCGAGCGGCTGCGCGCCGCGCTG
AAGGAGGGCAAGAAGGCCTACTGGATCTGCCCGCTGGTGGAGGAGACGGAAGAGTCCGACCTGATGTCGGCGGAAGAACG
ACATGCGGTTCTCTCGCAGATGCTCGGTGCCAATATCGGTCTCATCCATGGGCGCATGAGCGGCCCTGAGAAGGACGCCG
CCATGCTGGCTTTCAAGAACGGCGAAACCCGGCTGCTGGTGGCAACGACAGTGGTGGAAGTGGGTGTCGACGTTCCGGAC
GCCACGATCATGGTCATCGAACATGCCGAACGTTTCGGCCTGGCCCAGCTTCACCAGCTGCGTGGCCGGGTTGGACGCGG
TGACGAGGCCTCCACCTGCATCCTGCTCTACAAGGGGCCGCTCAGCGAAAACGGCCGCGCCCGACTTTCCATCCTGCGCG
ACAGCGAGGACGGCTTCCTGATTGCCGAAGAGGATTTGAAGCTGCGCGGCGAAGGCGAACTCCTCGGCACCCGCCAGTCC
GGCACCCCGGGCTTCCGCATCGCCAGCCTCGAAGCCCATGCCGACCTCCTGGAAATCGCCCGCAAGGACGCCGCCTATGT
CATCGAGCGCGACCCCGAACTGACCGGCCCGCGCGGCGAAAGCCTGCGCACCCTGCTCTATCTGCACCGCCGCGACGAAG
CTATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(18-180)

DEAD/DEAH box helicase (DEAD)

(275-432)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-681)

Helicase conserved C-terminal domain (Helicase_C)

(474-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

42.169

94.722

0.399
  recG/mmsA Streptococcus pneumoniae R6

40.588

97.004

0.394
  recG/mmsA Streptococcus pneumoniae R36A

40.588

97.004

0.394
  recG Bacillus subtilis subsp. subtilis str. 168

38.517

98.146

0.378