Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   FIU11_RS01280 Genome accession   NZ_CP040990
Coordinates   163209..163799 (-) Length   196 a.a.
NCBI ID   WP_004728565.1    Uniprot ID   -
Organism   Vibrio furnissii strain FDAARGOS_777     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 158209..168799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU11_RS01255 (FIU11_01255) aroB 158556..159641 (-) 1086 WP_004728570.1 3-dehydroquinate synthase -
  FIU11_RS01260 (FIU11_01260) aroK 159669..160187 (-) 519 WP_004728569.1 shikimate kinase AroK -
  FIU11_RS01265 (FIU11_01265) pilQ 160375..162099 (-) 1725 WP_004728568.1 type IV pilus secretin PilQ Machinery gene
  FIU11_RS01270 (FIU11_01270) pilP 162124..162636 (-) 513 WP_004728567.1 pilus assembly protein PilP Machinery gene
  FIU11_RS01275 (FIU11_01275) pilO 162626..163216 (-) 591 WP_004728566.1 type 4a pilus biogenesis protein PilO Machinery gene
  FIU11_RS01280 (FIU11_01280) pilN 163209..163799 (-) 591 WP_004728565.1 PilN domain-containing protein Machinery gene
  FIU11_RS01285 (FIU11_01285) pilM 163789..164793 (-) 1005 WP_004728564.1 type IV pilus assembly protein PilM Machinery gene
  FIU11_RS01290 (FIU11_01290) - 164938..167418 (+) 2481 WP_038152617.1 penicillin-binding protein 1A -
  FIU11_RS01295 (FIU11_01295) oxyR 167504..168400 (-) 897 WP_004728562.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21982.09 Da        Isoelectric Point: 8.1543

>NTDB_id=368512 FIU11_RS01280 WP_004728565.1 163209..163799(-) (pilN) [Vibrio furnissii strain FDAARGOS_777]
MVHDINLMPWREARREAHKHRFAGLCVLAVLAALGLQWGAGAYIDRQTQVQQQRLDFLNQHIRDLDSQIAALKVTEQEHK
ALLTRLSVVESLQQKRNKTTEFMNLMPQLIPEGVYVDKIKMNGQEIELSGISDSTARLATMLDNLEKSDQLSEVGMHSIV
AGNRRFGKQFQSFKVSFLFHASSQQAVSADTGGAHG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=368512 FIU11_RS01280 WP_004728565.1 163209..163799(-) (pilN) [Vibrio furnissii strain FDAARGOS_777]
ATGGTGCATGACATCAATTTAATGCCGTGGCGAGAAGCGCGGCGCGAAGCCCATAAACACCGTTTTGCCGGTCTGTGCGT
GCTGGCGGTGCTGGCCGCGTTGGGACTGCAATGGGGCGCAGGAGCGTATATCGACCGTCAAACACAAGTGCAGCAACAAC
GGCTGGATTTTCTCAACCAACATATTCGTGACTTAGACAGCCAAATTGCGGCGCTGAAGGTGACCGAGCAAGAGCATAAG
GCATTGTTGACCCGCTTGTCGGTGGTGGAGTCGTTGCAGCAGAAACGTAACAAGACCACGGAGTTCATGAACTTGATGCC
TCAACTGATCCCGGAAGGCGTCTACGTCGACAAAATCAAAATGAACGGTCAGGAAATTGAGCTGAGTGGCATCAGCGACA
GCACCGCGCGGCTGGCAACCATGCTCGATAATTTGGAGAAATCCGACCAACTGTCTGAGGTCGGTATGCATTCGATTGTG
GCGGGTAACCGTCGGTTTGGTAAGCAATTTCAGAGTTTTAAAGTGTCGTTCTTGTTCCACGCTTCATCGCAGCAAGCGGT
GAGTGCTGATACCGGAGGTGCCCATGGCTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

69.036

100

0.694
  pilN Vibrio campbellii strain DS40M4

62.842

93.367

0.587

Multiple sequence alignment