Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SSPS47_RS18620 Genome accession   NZ_CP048397
Coordinates   4177100..4177699 (+) Length   199 a.a.
NCBI ID   WP_147873611.1    Uniprot ID   -
Organism   Streptomyces sp. S4.7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4172100..4182699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSPS47_RS18605 (SSPS47_18865) - 4174178..4174828 (+) 651 WP_164252061.1 hypothetical protein -
  SSPS47_RS18610 (SSPS47_18870) - 4175526..4176332 (-) 807 WP_164254708.1 SLATT domain-containing protein -
  SSPS47_RS18615 (SSPS47_18875) - 4176661..4176996 (+) 336 WP_147873610.1 YbaB/EbfC family nucleoid-associated protein -
  SSPS47_RS18620 (SSPS47_18880) recR 4177100..4177699 (+) 600 WP_147873611.1 recombination mediator RecR Machinery gene
  SSPS47_RS18625 (SSPS47_18885) - 4177692..4178357 (+) 666 WP_164252062.1 DUF5063 domain-containing protein -
  SSPS47_RS18630 (SSPS47_18890) - 4178437..4179432 (-) 996 WP_164252063.1 hypothetical protein -
  SSPS47_RS18635 (SSPS47_18895) - 4179429..4179914 (-) 486 WP_164252064.1 hypothetical protein -
  SSPS47_RS36260 - 4180183..4181295 (+) 1113 WP_343234894.1 3-keto-5-aminohexanoate cleavage protein -
  SSPS47_RS36265 - 4181372..4181500 (+) 129 WP_343234895.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21874.24 Da        Isoelectric Point: 5.1721

>NTDB_id=368513 SSPS47_RS18620 WP_147873611.1 4177100..4177699(+) (recR) [Streptomyces sp. S4.7]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHSLLEVKDKVRFCEVCGNVAQEQRCGICRDARRDLTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=368513 SSPS47_RS18620 WP_147873611.1 4177100..4177699(+) (recR) [Streptomyces sp. S4.7]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTTCAGGCCGAACCGACCGACGTCCGCCGCCTCGCGCACTCCCTGCTCGAAGTGAAGGACAAGGTCC
GCTTCTGCGAGGTATGCGGCAATGTGGCGCAGGAGCAGCGCTGCGGCATCTGCCGCGACGCGCGCCGCGACCTGACGGTC
ATCTGCGTCGTCGAGGAGCCCAAGGACGTCGTGGCCATCGAGCGCACCCGCGAGTTCCGCGGCAAGTACCACGTGCTCGG
CGGCGCGATCAGCCCCATCGAGGGCGTGGGCCCGGACGACCTGCGGATCCGTGAGCTGCTGGCCCGTCTCGCCGACGGTA
CGGTCACCGAACTGATCCTGGCGACCGATCCCAACCTGGAGGGCGAAGCCACGGCCACGTATCTCGCACGCATGATCAAA
CCGATGGGCCTGAAGGTCACACGCCTTGCCAGCGGTCTGCCCGTGGGGGGCGACCTGGAATACGCCGACGAGGTCACGCT
GGGGCGTGCCTTCGAGGGGAGACGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.093

97.487

0.518
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462

Multiple sequence alignment