Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   SSPS47_RS03135 Genome accession   NZ_CP048397
Coordinates   720236..720871 (+) Length   211 a.a.
NCBI ID   WP_164248542.1    Uniprot ID   -
Organism   Streptomyces sp. S4.7     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 715236..725871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSPS47_RS03110 (SSPS47_03180) - 716843..717154 (-) 312 WP_164248534.1 urease subunit beta -
  SSPS47_RS03115 (SSPS47_03185) - 717170..717472 (-) 303 WP_164248536.1 urease subunit gamma -
  SSPS47_RS03120 (SSPS47_03190) - 717608..718234 (-) 627 WP_147875868.1 TetR/AcrR family transcriptional regulator -
  SSPS47_RS03125 (SSPS47_03195) - 718360..719364 (+) 1005 WP_164248538.1 ABC transporter permease -
  SSPS47_RS03130 (SSPS47_03200) - 719861..720151 (-) 291 WP_164248540.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  SSPS47_RS03135 (SSPS47_03205) clpP 720236..720871 (+) 636 WP_164248542.1 ATP-dependent Clp protease proteolytic subunit Regulator
  SSPS47_RS03140 (SSPS47_03210) - 720879..721187 (+) 309 WP_147875883.1 hypothetical protein -
  SSPS47_RS03145 (SSPS47_03215) - 721722..722192 (+) 471 WP_164248544.1 C40 family peptidase -
  SSPS47_RS03150 (SSPS47_03220) - 722249..722680 (-) 432 WP_164248546.1 ATP-binding protein -
  SSPS47_RS03155 (SSPS47_03225) - 722926..724134 (-) 1209 WP_239064753.1 8-amino-7-oxononanoate synthase -
  SSPS47_RS03160 (SSPS47_03230) bioB 724278..725420 (+) 1143 WP_164248548.1 biotin synthase BioB -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22615.60 Da        Isoelectric Point: 4.7272

>NTDB_id=368487 SSPS47_RS03135 WP_164248542.1 720236..720871(+) (clpP) [Streptomyces sp. S4.7]
MNRPSARYVLPEFTERTSTGTRSLDPYSKLFEGRIVFLGTALDDTSANDVIAQLLQLEYSAPDQDIALYINSPGGSLSAM
SAVYDTMQVVGCDVATTCLGQAVSTAAVLLAAGAPGKRMALPGARVVLQQPGIEEPVRGQPSDLAIHAEELLRLRALMAS
MLVRHTGRSAERIDNDIDRDTVFDATGAVEYGLVDQVAQDRRASLGLHSPR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=368487 SSPS47_RS03135 WP_164248542.1 720236..720871(+) (clpP) [Streptomyces sp. S4.7]
ATGAACCGTCCTTCCGCCCGCTACGTCCTGCCCGAGTTCACCGAGCGGACCTCCACCGGGACCCGGTCCCTCGACCCGTA
CTCCAAGCTGTTCGAAGGCCGGATCGTCTTCCTCGGCACGGCTCTGGACGACACCTCGGCGAACGACGTGATCGCCCAGC
TCCTCCAGCTCGAATACTCGGCGCCCGACCAGGACATCGCCCTTTACATCAACTCCCCCGGCGGCTCCCTCAGCGCCATG
TCCGCCGTGTACGACACGATGCAGGTCGTCGGCTGCGACGTGGCGACCACCTGTCTCGGCCAGGCGGTGTCGACCGCCGC
CGTCCTGCTGGCCGCCGGGGCGCCCGGCAAGCGGATGGCACTGCCCGGCGCGCGCGTCGTGCTCCAGCAGCCGGGGATCG
AGGAGCCCGTACGCGGCCAGCCGTCCGATCTCGCCATCCACGCCGAGGAGTTGCTGCGACTGCGAGCCCTGATGGCGAGC
ATGCTGGTGCGGCACACCGGCCGGAGCGCCGAGCGGATCGACAACGACATCGACCGGGACACCGTCTTCGACGCGACGGG
CGCCGTGGAGTACGGCCTGGTGGACCAGGTCGCACAGGACCGCCGGGCGTCCCTCGGCCTCCACTCCCCCCGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

44.444

89.573

0.398
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

43.158

90.047

0.389
  clpP Streptococcus mutans UA159

39.691

91.943

0.365
  clpP Streptococcus pneumoniae Rx1

40.741

89.573

0.365
  clpP Streptococcus pneumoniae D39

40.741

89.573

0.365
  clpP Streptococcus pneumoniae R6

40.741

89.573

0.365
  clpP Streptococcus pneumoniae TIGR4

40.741

89.573

0.365