Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   E8E07_RS15660 Genome accession   NZ_CP040911
Coordinates   3195292..3195696 (-) Length   134 a.a.
NCBI ID   WP_086400252.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AB17H194     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3190292..3200696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8E07_RS15630 - 3190376..3190645 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  E8E07_RS15635 rapZ 3190642..3191493 (-) 852 WP_002117179.1 RNase adapter RapZ -
  E8E07_RS15640 panC 3191517..3192365 (-) 849 WP_086400250.1 pantoate--beta-alanine ligase -
  E8E07_RS15645 panB 3192369..3193178 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  E8E07_RS15650 folK 3193224..3193706 (-) 483 WP_014208398.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  E8E07_RS15655 pcnB 3193703..3195166 (-) 1464 WP_086400251.1 polynucleotide adenylyltransferase PcnB -
  E8E07_RS15660 comEA 3195292..3195696 (-) 405 WP_086400252.1 ComEA family DNA-binding protein Machinery gene
  E8E07_RS15665 mazG 3195665..3196471 (-) 807 WP_086400253.1 nucleoside triphosphate pyrophosphohydrolase -
  E8E07_RS15670 - 3196584..3197357 (+) 774 WP_019767974.1 SDR family oxidoreductase -
  E8E07_RS15675 - 3197880..3199193 (+) 1314 WP_086400346.1 COG3014 family protein -
  E8E07_RS15680 - 3199213..3199623 (+) 411 WP_063098121.1 YcfL family protein -
  E8E07_RS15685 lpoB 3199677..3200279 (+) 603 WP_063098120.1 penicillin-binding protein activator LpoB -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15491.76 Da        Isoelectric Point: 10.6823

>NTDB_id=368259 E8E07_RS15660 WP_086400252.1 3195292..3195696(-) (comEA) [Acinetobacter pittii strain AB17H194]
MQFSMNLWKNKHNIFIILFWSLISSTLVQAQSFDQNFKEWKAKQQRYDQKLSMQRSAHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=368259 E8E07_RS15660 WP_086400252.1 3195292..3195696(-) (comEA) [Acinetobacter pittii strain AB17H194]
ATGCAGTTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTATTTTATTTTGGAGCCTGATCTCATCGACGCT
AGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGAGGTATGATCAGAAGTTGAGCATGC
AGCGCTCCGCTCATTCTAATAGCCCAAAAAGTTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAATGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

68.613

100

0.701
  comEA Acinetobacter baumannii D1279779

68.613

100

0.701
  comEA Acinetobacter baylyi ADP1

43.548

92.537

0.403

Multiple sequence alignment