Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   E8E07_RS10260 Genome accession   NZ_CP040911
Coordinates   2103210..2103590 (-) Length   126 a.a.
NCBI ID   WP_017482272.1    Uniprot ID   A0A9X3QIG5
Organism   Acinetobacter pittii strain AB17H194     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2098210..2108590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8E07_RS10230 tadA 2098213..2098716 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  E8E07_RS10235 hibch 2098722..2099846 (-) 1125 WP_014206599.1 enoyl-CoA hydratase/isomerase family protein -
  E8E07_RS10240 ung 2099843..2100556 (-) 714 WP_017399503.1 uracil-DNA glycosylase -
  E8E07_RS10245 - 2100610..2101206 (-) 597 WP_017399502.1 6-pyruvoyl trahydropterin synthase family protein -
  E8E07_RS10250 gspK 2101435..2102394 (-) 960 WP_086398948.1 type II secretion system minor pseudopilin GspK -
  E8E07_RS10255 xcpW 2102395..2103210 (-) 816 WP_069035668.1 type II secretion system minor pseudopilin GspJ Machinery gene
  E8E07_RS10260 xcpV 2103210..2103590 (-) 381 WP_017482272.1 type II secretion system minor pseudopilin GspI Machinery gene
  E8E07_RS10265 - 2103580..2104134 (-) 555 WP_086398947.1 type II secretion system protein -
  E8E07_RS10270 - 2104141..2104749 (-) 609 WP_057085321.1 TetR/AcrR family transcriptional regulator -
  E8E07_RS10275 ycfH 2104786..2105559 (-) 774 WP_086398946.1 TatD family hydrolase -
  E8E07_RS10280 pilZ 2105577..2105918 (-) 342 WP_064784079.1 PilZ domain-containing protein -
  E8E07_RS10285 holB 2105929..2106909 (-) 981 WP_068566161.1 DNA polymerase III subunit delta' -
  E8E07_RS10290 kdsB 2106923..2107684 (-) 762 WP_086398945.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=368252 E8E07_RS10260 WP_017482272.1 2103210..2103590(-) (xcpV) [Acinetobacter pittii strain AB17H194]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQITSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=368252 E8E07_RS10260 WP_017482272.1 2103210..2103590(-) (xcpV) [Acinetobacter pittii strain AB17H194]
ATGAAATCTAAAGGTTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAATTACTTCTCAAGGCGAAACTTGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCAGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937

Multiple sequence alignment