Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   E8E07_RS01745 Genome accession   NZ_CP040911
Coordinates   369096..369578 (+) Length   160 a.a.
NCBI ID   WP_150378059.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AB17H194     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 364096..374578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8E07_RS01735 pilX 364116..364925 (+) 810 WP_068526925.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  E8E07_RS20025 - 364937..365629 (+) 693 Protein_331 hypothetical protein -
  E8E07_RS01740 - 366074..369085 (+) 3012 Protein_332 pilus assembly protein -
  E8E07_RS01745 pilY2 369096..369578 (+) 483 WP_150378059.1 type IV pilin protein Machinery gene
  E8E07_RS01750 pilE 369575..370000 (+) 426 WP_014207809.1 type IV pilin protein Machinery gene
  E8E07_RS01755 rpsP 370148..370399 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  E8E07_RS01760 rimM 370420..370968 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  E8E07_RS01765 trmD 371011..371766 (+) 756 WP_086399354.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  E8E07_RS01770 rplS 371986..372354 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  E8E07_RS01775 lip 372407..373348 (-) 942 WP_080777126.1 lipase family alpha/beta hydrolase -
  E8E07_RS01780 - 373464..374495 (-) 1032 WP_086399353.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17535.81 Da        Isoelectric Point: 8.4721

>NTDB_id=368242 E8E07_RS01745 WP_150378059.1 369096..369578(+) (pilY2) [Acinetobacter pittii strain AB17H194]
MNKYYVLRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTESRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=368242 E8E07_RS01745 WP_150378059.1 369096..369578(+) (pilY2) [Acinetobacter pittii strain AB17H194]
ATGAATAAATATTATGTTCTGCGGTTTAATCAGGGGGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCGACGGCTTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACCACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGAGTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGCTGCCAAAGTT
TAACAGCTACAGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

40.698

100

0.438

Multiple sequence alignment