Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   E8E07_RS01735 Genome accession   NZ_CP040911
Coordinates   364116..364925 (+) Length   269 a.a.
NCBI ID   WP_068526925.1    Uniprot ID   A0AAW8QIA9
Organism   Acinetobacter pittii strain AB17H194     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359116..369925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8E07_RS01700 - 359674..359829 (-) 156 WP_014207816.1 hypothetical protein -
  E8E07_RS01705 rpoZ 359868..360146 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  E8E07_RS01710 gmk 360219..360848 (-) 630 WP_005804544.1 guanylate kinase -
  E8E07_RS01715 ispH 360971..361921 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  E8E07_RS01720 fimU 362091..362564 (+) 474 WP_005067119.1 pilus assembly FimT family protein Machinery gene
  E8E07_RS01725 pilV 362558..363118 (+) 561 WP_078210318.1 type IV pilus modification protein PilV Machinery gene
  E8E07_RS01730 pilW 363118..364119 (+) 1002 WP_005804547.1 PilW family protein Machinery gene
  E8E07_RS01735 pilX 364116..364925 (+) 810 WP_068526925.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  E8E07_RS20025 - 364937..365629 (+) 693 Protein_331 hypothetical protein -
  E8E07_RS01740 - 366074..369085 (+) 3012 Protein_332 pilus assembly protein -
  E8E07_RS01745 pilY2 369096..369578 (+) 483 WP_150378059.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28449.20 Da        Isoelectric Point: 6.8457

>NTDB_id=368241 E8E07_RS01735 WP_068526925.1 364116..364925(+) (pilX) [Acinetobacter pittii strain AB17H194]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQSDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=368241 E8E07_RS01735 WP_068526925.1 364116..364925(+) (pilX) [Acinetobacter pittii strain AB17H194]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGTGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGTCAAGTGAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACCAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAATCCTGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCTAATAATGCGGTTGTTGAAGATGGCGGAGTGGCGG
GTTTCTGCGATTTAACAAGTGACTATGGTAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCTGGCTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACACAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGCG
ATTGCTTAAGCACAAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.441

100

0.914

Multiple sequence alignment