Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   E8E07_RS01720 Genome accession   NZ_CP040911
Coordinates   362091..362564 (+) Length   157 a.a.
NCBI ID   WP_005067119.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AB17H194     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 357091..367564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8E07_RS01695 spoT 357553..359658 (-) 2106 WP_002116807.1 RelA/SpoT family protein -
  E8E07_RS01700 - 359674..359829 (-) 156 WP_014207816.1 hypothetical protein -
  E8E07_RS01705 rpoZ 359868..360146 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  E8E07_RS01710 gmk 360219..360848 (-) 630 WP_005804544.1 guanylate kinase -
  E8E07_RS01715 ispH 360971..361921 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  E8E07_RS01720 fimU 362091..362564 (+) 474 WP_005067119.1 pilus assembly FimT family protein Machinery gene
  E8E07_RS01725 pilV 362558..363118 (+) 561 WP_078210318.1 type IV pilus modification protein PilV Machinery gene
  E8E07_RS01730 pilW 363118..364119 (+) 1002 WP_005804547.1 PilW family protein Machinery gene
  E8E07_RS01735 pilX 364116..364925 (+) 810 WP_068526925.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  E8E07_RS20025 - 364937..365629 (+) 693 Protein_331 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16912.60 Da        Isoelectric Point: 7.7942

>NTDB_id=368238 E8E07_RS01720 WP_005067119.1 362091..362564(+) (fimU) [Acinetobacter pittii strain AB17H194]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=368238 E8E07_RS01720 WP_005067119.1 362091..362564(+) (fimU) [Acinetobacter pittii strain AB17H194]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAATCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAACTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTAATAACCAATATCACCCAAGACACACTTTTATCTATCTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

88.535

100

0.885

Multiple sequence alignment