Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilV   Type   Machinery gene
Locus tag   E8E07_RS01725 Genome accession   NZ_CP040911
Coordinates   362558..363118 (+) Length   186 a.a.
NCBI ID   WP_078210318.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AB17H194     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 357558..368118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8E07_RS01700 - 359674..359829 (-) 156 WP_014207816.1 hypothetical protein -
  E8E07_RS01705 rpoZ 359868..360146 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  E8E07_RS01710 gmk 360219..360848 (-) 630 WP_005804544.1 guanylate kinase -
  E8E07_RS01715 ispH 360971..361921 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  E8E07_RS01720 fimU 362091..362564 (+) 474 WP_005067119.1 pilus assembly FimT family protein Machinery gene
  E8E07_RS01725 pilV 362558..363118 (+) 561 WP_078210318.1 type IV pilus modification protein PilV Machinery gene
  E8E07_RS01730 pilW 363118..364119 (+) 1002 WP_005804547.1 PilW family protein Machinery gene
  E8E07_RS01735 pilX 364116..364925 (+) 810 WP_068526925.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  E8E07_RS20025 - 364937..365629 (+) 693 Protein_331 hypothetical protein -

Sequence


Protein


Download         Length: 186 a.a.        Molecular weight: 19855.89 Da        Isoelectric Point: 7.9105

>NTDB_id=368239 E8E07_RS01725 WP_078210318.1 362558..363118(+) (pilV) [Acinetobacter pittii strain AB17H194]
MLMQGSKQKAQVGVGLLEVLVALILIAIGVLGYVALQVRAMDASSEALSKSQAIMIMRGLAENIRVNSSQASQYPAFVRS
YSNYSSTTAAPTLCFNTACTPSQLAQFDAYQAAKNADQLGMKITMTNCPGVTSTMAQQRQCLFVFWGKTAPVITTNEGVT
SADVSSCMSTNGVYVNNSNCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=368239 E8E07_RS01725 WP_078210318.1 362558..363118(+) (pilV) [Acinetobacter pittii strain AB17H194]
ATGTTAATGCAGGGTTCTAAACAAAAAGCTCAAGTCGGGGTGGGTTTATTAGAAGTGTTGGTTGCCTTAATTTTAATTGC
GATAGGGGTTTTAGGATATGTTGCCTTGCAAGTTCGGGCTATGGATGCTTCTTCAGAGGCATTAAGCAAATCTCAAGCGA
TTATGATCATGAGAGGATTAGCAGAAAACATTCGCGTAAATAGTTCTCAAGCTAGTCAGTATCCCGCATTTGTCCGTAGT
TATAGCAATTATTCATCTACCACCGCAGCTCCTACGTTGTGTTTCAATACAGCTTGTACACCTTCTCAGCTTGCCCAATT
TGATGCATATCAAGCAGCAAAAAATGCTGATCAACTTGGCATGAAAATCACAATGACAAATTGCCCAGGGGTTACAAGCA
CGATGGCCCAGCAGAGGCAATGTCTTTTTGTTTTTTGGGGAAAAACCGCTCCAGTAATTACAACAAATGAGGGAGTCACG
AGCGCGGATGTGTCGAGCTGTATGAGTACAAATGGTGTTTATGTCAATAATTCGAACTGTTTAATGATGGAGGCATATTA
A

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

83.871

100

0.839


Multiple sequence alignment